Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0228 ATGAAAACCAAAATCCCGCGCTGTTCCGTTTGCCAAACGCGCTACGACGAGGAGCAGCGGGTCCCACTCCTTCTCCAATGCGGCCACGGCTTCTGCCGAGACTGCCTTTCCAGAATGTTCTCCGCCTCAGCCGACACCACGCTGACGTGTCCGCGCTGCCGCCACTTGTCCCCCGTCGGAAACTCCGTCCACGCCCTCCCCAAAAACTTCCCCGTCCTCGCGCTCCTCCACTCGCCCTCTTCTGGCGCCGTCAGGTCCGTTCTCGACTTCGATTTCGACTGCaccgacgacgacgacgacgaagAGGAGGATCAAGACGACGACGTATCACGGCGGCGGAGGAGCGGTGGGGGGTTGAGGCTGGTGCGGCGGATTGGGGGGAGGGCGTGGACGGCGGTGGCGGGCGGCAGAGGGCGGAAGGTGGCGGTGAAGAAGGTGGAGGAGGTGGAGTGGGTGATGGAGATGCTCGAGTGGTTGCGAAGGGGTTCGATGTGGTGTAGGAATGTGTGCGCGTTTCACGGGGCAGTGAGAGTGGGTGATGATGGTTTGTGGCTTGTCATGGATAGGTGTTACGGCTCGGTTCAGTCTGAGATGCAACGCAACGAGGGCAGACTCACTCTGGAGCAAGTCCTAAGATACGGGGCAGACATTACTAGAGGGATTGCCGAGCTTCATGCTGCAGGTATTGTTTGCATGAATATAAAGCCATCCAATCTTCTTCTTGATTCAAATGGTCATGCAGTGGTTTCTGATTATGGGCTTCCTGCTATTCTGAAGAAGCATTCCTGTTGGAAGGCCCAACCTGAGTGTGACTCCTCAAAGACCCACTCATGTATGGAATGTACAGTGGTCAGCCCACATTATACTGCTCCCGAGGCTTGGGGGGAACGTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGTATATCAGCAGAGTCTGATGCCTGGAGTTTTGGCTGTGCACTGGTGGAGATGTGCACGGGTTCTGTTCCTTGGGCTGGTCTAAGTTCAGAAGAAATTTATCAAGCAGTTGTCAAGGCAAAGAAACTGCCTCCGCAGTATGCTAGTGTGGTTGGTGGTGGAATACCGAGTGATTTGTGGAGGATGATTGGAGAGTGCTTGCAGTTCAAGCCATCTAAAAGGCCTAGTTTTAATGCAATGTTAGCAATATTTCTTCGTCATTTGCAGGGAATACCACGCAGCCTTCCTGCAAGCCCTGATAATGATTTTGTTAAAAGCTTTTCGTCAAATGTGATGGAGTTGTCCCCTTTGCCTGAATTAGAAGTTTCTCAGCACAATCCATTCCATCTTCATCAACGTGTGTCTGAGGGGGATGTCAGAAGTGTTAGAGATCTTCTTGTCAAGGCTGCATCAGATTATGGCAGCAACTACCTATCTTCTCTGTTGGAAGCTCAAAATGCTGATGGACAAACTGCTCTCCACTTGGCCTGTAGACGTGGCAGTGCAGAACTTGTTGAGGTAATTTTGGAGTATGAAGAGGCAAATGTTGATGTCTTGGACAAAGATGGAGATCCTCCTCTTGTTTATGCATTGGCTGCTGGATCCCCAGAATGTGTTCATAGTCTTATCAAAAGAGGTGCTAATGTGAGGTCACAATTAAGGGATGGCTTTGGCCCATCTGTTGCTCATGTTTGTGCCTATCATGGCCAACCAGATTGCATGCAAGAATTACTATTAGCTGGAGCTGATCCTAATGCGGTGGATGATGAAGGTGAATCTGTACTGCATAGAGCAATTGCCAAGAATTCCACTGATTGCGCCCTTGTGATACTGGAAAATGGGGGCAGTAGATCAATGGCCATCTTGAATTCAAAGAATATGACACCGCTGCACTTGTGTGTGTCAACATGGAATGTTGCCGTGGTAAAAAGATGGGTGGAAGTTGCAACTTCTGATGAGATTGCTGAATCAATTGACATACCGAGCCCTATGGGCACAGCTTTGTGCATGGCTGCTGCCTCTAAGAAAGGTCATGAAAGTGAGGGGAGAGAATTGGTGCAAATATTGCTCACTGCTGGACCAGATCCATATGCTCAAGATTCACAGCGCGGGTGGACTGCTTTGCATCCAGCTGTTATGACTGACGATGTTGAATTGGTTAAGGTTATTCTTGCTGCTGGTATTGATGTGAACATTCGCAATGCGCACAACAGCATACCTCTTCATATAGCCTTAGCTAGGGGAGCTAAGTCATGTGTTGAACTACTTCTATCTATTGGGGCAAATTGTAATTTGCAGGATGATGATGGTAACACTGCTTTCCATATGGCAGCAGATACAGCAAAAATGATACGTGAAAATCTTGATTGGCTCATTGTTATGCTTGGGAATCCTAATGCTGATGTATTCGTCAGAAACCACAGTGGCAAGACTCTATGTGACATCTTGGAGGTCCTTCCTGGAGAATGGATATCTGAAGATCTGATGGAGGCACTCATGAAGAAAGGAGTTTGTCTCTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAGAAAAACTTCCTTAACTCCAACAAATGGTTGGGAAGGTAATTGGCAGAAGCGGGTGGGCTTTGTGCAAAGAGTTTCAGACAAAGATAATCTCATTGTTTCATTTTGTTCTGGAGAGTATAGCATCTCGGCAAATGAAGTTGTAAAAGTTATTCCATTAGACAGGGGACAACATGTGCAGCTTAAACAGGATGTAAAAGAGCCCAGGTTTGGTTGGCCTGGACAGTCTCGTGACAGCATTGGGACGGTATTATGTGTTGATGATGATGGGATCATCCGTGTTGGGTTTCCTGGACAATCCAGAGGATGGAAAGCTGACCCAGGAGAGATGGAACAGGTTGAGGAATTCAAGGTTGGAGATTGGGTTCATATTCGTCCTTTTCTTACATCTACAAAATATGGACTAGGATCTGTGACACTGGGAAGCATCGGCATTGTATATTGTATCAGACCAGACAGTAGTCTGTTAACAGAACTGAGTTACCTGCCAACTCCATGGCATTGTGAACCAGAGGAGGTTGAGCATGTTGTCCCTTTTAGGATTGGTGATCGGATATGTGTGAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGTGTCGGAAAAATAAGAGAGATTGAGAGTGATGGTCTCTTAACAATAGATATACCAAACCGACCTGTTCCCTGGCAAGCAGATCCATCGGATATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTTAAAGCTTCAGTGTCTACTCCAAGATATGGGTGGGAGGATATTACAAGAAACAGTATTGGAGTAATTCATAGCTTGGAGGAGGATGGCGATATGGATATTGCCTTTTGCTTCAGGAATAAGCCTTTTCCTTGCTCAGTCACTGATGTTGAGAAAGTTCCCCATTTTGAGGTGGGTCAACAAATTCGTGTGATGCCATCTGTTAACCAGCCACGGCTTGGATGGTCAAACGAATCACCCTCTACTGTTGGAAAAATAGTGAGAATTGATCTGGATGGTGCTCTCAATGTGAAGGTGCCTGGTAGGCAGAGCTTGTGGAAAGTTTCTCCTGGAGATGTGGAACAAGTTCCAGGATTTGAAGTTGGTGACTGGGTGTGCTCAAAACCGAGCCTGGGAAGCAGATCAAACAATGACTTGAGTGGTGTTAGAAGTATAGCTGTTGTGCATAGTGTACAAGATTCTGGTTACTTGGAGTTGGCTTGCTGTTTCCGTAAATTGAAGTCAATGACTCATTATACAGAAGTTGAAAAGGTTCCTTGCTTTAAAGTTGGGCAGTATGTTAGGTTCAGAGCTGGTTTGGTGGAACCGAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCGAGGTGTTTTAACCAGCATTCATGCTGATGGAGAAGTGAAGGTGGCATTCTTTGGTTTGCCAGGACTGTGGAGAGGAGACCCTGCAGACCTTGAAATTGAACAGATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAAAGATGATGCCAATGACTGGAACTCAATTGGGCCAGGCAGTGTTGGTGTTGTACAAGGCACAGGGTATGAAGGAGAAGAATGGAACAAAAGTACTTATGTTGCCTTTTGTGGAGAGCAAGAAAGGTGGGTAGGACCAAGTTCCCATCTTGAAAGAGTTCACAAACTCTTTGTTGAACAGAAGGTTAGAGTTAAACTTAACATAAAGCAACCAAGATTTGGATGGTCTGGGCACACCCATGCAAGCATTGGAACGATACAAGCCATTGATGCTGATGGAAAGCTTCGAATATACACGCCAGCAGGATCAAAAGCATGGACGTTGGACCCATCAGAAGTTGAGGTAGTAGAACAGAAGGGGCTGTGTGTTGGAGACTGGGTCAAGGTTAAAGCATCAGTTTCAACCCCAACCCACCACTGGGGAGAGGTGACTCATTCAGGCATAGGAGTGGTGTATCGGATGGAAGATGAGGATCTGTGGGTGGCTTTCTGTTTTATGGAGAGGCTGTGGCTTTGTAAGGCATGGGAAATGGAACAGGTTAGGCCATTTAAAGTGGGGGACAATGTTAGGATCAAAGATGGATTGGTGACCCCACGGTGGGGATGGGGAATGGAGACACGTGCCAGTAAGGGACGGGTAGTAGGGGTAGATGCAAATGGCAAGGTAAGAATAAAGTTCCAGTGGAGGGAAGGGAAGCCTTGGGTAGGAGACCCTGCTGATGTTGTCCTTGATGAAAATTGA 4770 0.4709 MKTKIPRCSVCQTRYDEEQRVPLLLQCGHGFCRDCLSRMFSASADTTLTCPRCRHLSPVGNSVHALPKNFPVLALLHSPSSGAVRSVLDFDFDCTDDDDDEEEDQDDDVSRRRRSGGGLRLVRRIGGRAWTAVAGGRGRKVAVKKVEEVEWVMEMLEWLRRGSMWCRNVCAFHGAVRVGDDGLWLVMDRCYGSVQSEMQRNEGRLTLEQVLRYGADITRGIAELHAAGIVCMNIKPSNLLLDSNGHAVVSDYGLPAILKKHSCWKAQPECDSSKTHSCMECTVVSPHYTAPEAWGERVKKSLNLFWDDAIGISAESDAWSFGCALVEMCTGSVPWAGLSSEEIYQAVVKAKKLPPQYASVVGGGIPSDLWRMIGECLQFKPSKRPSFNAMLAIFLRHLQGIPRSLPASPDNDFVKSFSSNVMELSPLPELEVSQHNPFHLHQRVSEGDVRSVRDLLVKAASDYGSNYLSSLLEAQNADGQTALHLACRRGSAELVEVILEYEEANVDVLDKDGDPPLVYALAAGSPECVHSLIKRGANVRSQLRDGFGPSVAHVCAYHGQPDCMQELLLAGADPNAVDDEGESVLHRAIAKNSTDCALVILENGGSRSMAILNSKNMTPLHLCVSTWNVAVVKRWVEVATSDEIAESIDIPSPMGTALCMAAASKKGHESEGRELVQILLTAGPDPYAQDSQRGWTALHPAVMTDDVELVKVILAAGIDVNIRNAHNSIPLHIALARGAKSCVELLLSIGANCNLQDDDGNTAFHMAADTAKMIRENLDWLIVMLGNPNADVFVRNHSGKTLCDILEVLPGEWISEDLMEALMKKGVCLSPTIFEVGDWVKFRKTSLTPTNGWEGNWQKRVGFVQRVSDKDNLIVSFCSGEYSISANEVVKVIPLDRGQHVQLKQDVKEPRFGWPGQSRDSIGTVLCVDDDGIIRVGFPGQSRGWKADPGEMEQVEEFKVGDWVHIRPFLTSTKYGLGSVTLGSIGIVYCIRPDSSLLTELSYLPTPWHCEPEEVEHVVPFRIGDRICVKRSVAEPRYAWGGETHHSVGKIREIESDGLLTIDIPNRPVPWQADPSDMEKVEDFKVGDWVRVKASVSTPRYGWEDITRNSIGVIHSLEEDGDMDIAFCFRNKPFPCSVTDVEKVPHFEVGQQIRVMPSVNQPRLGWSNESPSTVGKIVRIDLDGALNVKVPGRQSLWKVSPGDVEQVPGFEVGDWVCSKPSLGSRSNNDLSGVRSIAVVHSVQDSGYLELACCFRKLKSMTHYTEVEKVPCFKVGQYVRFRAGLVEPRWGWRGAQPESRGVLTSIHADGEVKVAFFGLPGLWRGDPADLEIEQMFEVGEWVRLKDDANDWNSIGPGSVGVVQGTGYEGEEWNKSTYVAFCGEQERWVGPSSHLERVHKLFVEQKVRVKLNIKQPRFGWSGHTHASIGTIQAIDADGKLRIYTPAGSKAWTLDPSEVEVVEQKGLCVGDWVKVKASVSTPTHHWGEVTHSGIGVVYRMEDEDLWVAFCFMERLWLCKAWEMEQVRPFKVGDNVRIKDGLVTPRWGWGMETRASKGRVVGVDANGKVRIKFQWREGKPWVGDPADVVLDEN 1589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0228 1589 PRINTS Ankyrin repeat signature 742 756 IPR002110 GO:0005515
Ssu2g0228 1589 PRINTS Ankyrin repeat signature 479 494 IPR002110 GO:0005515
Ssu2g0228 1589 SUPERFAMILY Protein kinase-like (PK-like) 122 397 IPR011009 -
Ssu2g0228 1589 Gene3D - 429 628 IPR036770 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 958 1078 IPR040847 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 1335 1456 IPR040847 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 834 952 IPR040847 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 1084 1204 IPR040847 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 1464 1584 IPR040847 -
Ssu2g0228 1589 Pfam Mind bomb SH3 repeat domain 1210 1329 IPR040847 -
Ssu2g0228 1589 Pfam Ankyrin repeats (many copies) 656 712 IPR002110 GO:0005515
Ssu2g0228 1589 Gene3D - 629 730 IPR036770 -
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat region circular profile. 512 539 - -
Ssu2g0228 1589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 3 1588 - -
Ssu2g0228 1589 SUPERFAMILY RING/U-box 7 62 - -
Ssu2g0228 1589 SMART ring_2 8 53 IPR001841 -
Ssu2g0228 1589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 83 IPR013083 -
Ssu2g0228 1589 SUPERFAMILY Ankyrin repeat 474 770 IPR036770 -
Ssu2g0228 1589 Pfam Ankyrin repeats (3 copies) 553 632 IPR002110 GO:0005515
Ssu2g0228 1589 Pfam Ankyrin repeats (3 copies) 442 540 IPR002110 GO:0005515
Ssu2g0228 1589 Pfam Ankyrin repeat 730 758 IPR002110 GO:0005515
Ssu2g0228 1589 Pfam Protein kinase domain 131 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Ssu2g0228 1589 Pfam RING-type zinc-finger 8 51 IPR027370 -
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat profile. 512 544 IPR002110 GO:0005515
Ssu2g0228 1589 Gene3D - 731 809 IPR036770 -
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat profile. 478 511 IPR002110 GO:0005515
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat region circular profile. 478 500 - -
Ssu2g0228 1589 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 3 1588 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Ssu2g0228 1589 Gene3D Transferase(Phosphotransferase) domain 1 190 418 - -
Ssu2g0228 1589 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Ssu2g0228 1589 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat profile. 547 579 IPR002110 GO:0005515
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat region circular profile. 693 724 - -
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 653 688 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 726 755 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 693 722 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 615 646 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 580 609 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 478 508 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 547 576 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 512 541 IPR002110 GO:0005515
Ssu2g0228 1589 SMART ANK_2a 759 794 IPR002110 GO:0005515
Ssu2g0228 1589 ProSiteProfiles Protein kinase domain profile. 119 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0228 1589 ProSiteProfiles Ankyrin repeat region circular profile. 726 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0228 Ssu-Chr2 13255704 13271077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0228 137 391 MAP Kinase Kinase Kinase AT4G18950 26.316 8.57e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Ssu2g0228 Pkinase 1.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0228 K16279 - gmx:100783181 2862.02