Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0224 ATGAAAGCCCCACCCATACTCACTCCTTTGGtgctcctcctcctcttctcccTAGCCAAAGGGCTGAACCCCAAATGTGATGCCGAGGACCATGGCTCAACCCTTCAAGTGTTCCATGTGTTCAGCCCATGTTCCCCATTCAGGCCATCAAAGGCAATGTCATGGGAAGAGAGTGTCCTACAGCTACAAGCCAAGGACCAGGCCAGGATGCTGTACCTGTCCAGCTTGGTAGCCAGGAGATCAATTGTCCCAATTGCCTCAGGCAGGCAAATCACACAGAGCCCTACATACATAGTGAAGGCCAAGATTGGTACCCCAGCTCAGACCCTGCTCTTGGCCATGGACACTAGCAATGATGCTGCCTGGGTCCCTTGCACTGCCTGTGTTGGTTGCTCAACAGCAACACCCTTTGCTCCTGCCAAGTCCACCACTTTCAGGAAAGTTGGATGTGGTGCTCCTCAGTGCAAGCAGGTACCGAACCCCACTTGCGGTGGAAGCGCGTGTGCATTCAACTTCACTTATGGCAGCTCCTCTGTGGCAGCTAACCTGGTCCAAGACACAGTGACCCTAGCCACTGACCCAGTTCCAGCCTACACCTTCGGGTGCATTCAAAACGCAACAGGGAGCTCAGTACCACCACAAGGGCTTTTGGGCCTGGGCCGAGGCCCGTTGTCACTCTTGGCCCAAACCCAAAAGCTCTATCAATCTACATTCTCCTACTGCTTGCCCAGCTTCAAAACACTCAACTTCAGTGGGTCACTAAGACTTGGGCCTGTGGCCCAGCCCAAGAGGATCAAGTTTACCCCTCTTCTCAAAAATCCTAGAAGATCATCGCTCTACTATGTGAACTTGGTGGCTATTAGAGTTGGCCGGAGAATTGTCGATATCCCTCCGGAGGTTTTAGCGTTCAACCCTACAACCGGCGCTGGCACCATTTTTGATTCTGGTACGGTATTCACCCGGCTGGTTGAACCGGCCTACCTCGCCGTCCGGGAGGCATTCCGGCGACGAGTTAGCATGGGCAAGAAACTCACCGTGACACGCCTAGGAGGGTTTGACACATGCTACACAGTCCCAATAGTTGCACCAACAATAACATTTATGTTCTCCGGCATGAACGTGACACTCCCACCGGACAACATCCTCATACACAGCACCGTCAGCAGCGTCACGTGCCTGGCCATGGCGGCGGCGCCGGACAACGTGACTCCGTGTTGA 1218 0.5304 MKAPPILTPLVLLLLFSLAKGLNPKCDAEDHGSTLQVFHVFSPCSPFRPSKAMSWEESVLQLQAKDQARMLYLSSLVARRSIVPIASGRQITQSPTYIVKAKIGTPAQTLLLAMDTSNDAAWVPCTACVGCSTATPFAPAKSTTFRKVGCGAPQCKQVPNPTCGGSACAFNFTYGSSSVAANLVQDTVTLATDPVPAYTFGCIQNATGSSVPPQGLLGLGRGPLSLLAQTQKLYQSTFSYCLPSFKTLNFSGSLRLGPVAQPKRIKFTPLLKNPRRSSLYYVNLVAIRVGRRIVDIPPEVLAFNPTTGAGTIFDSGTVFTRLVEPAYLAVREAFRRRVSMGKKLTVTRLGGFDTCYTVPIVAPTITFMFSGMNVTLPPDNILIHSTVSSVTCLAMAAAPDNVTPC 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0224 405 SUPERFAMILY Acid proteases 95 399 IPR021109 -
Ssu2g0224 405 Gene3D Acid Proteases 75 257 IPR021109 -
Ssu2g0224 405 Gene3D Acid Proteases 258 404 IPR021109 -
Ssu2g0224 405 ProSiteProfiles Peptidase family A1 domain profile. 97 405 IPR033121 -
Ssu2g0224 405 PANTHER ASPARTYL PROTEASE AED3-LIKE 11 403 - -
Ssu2g0224 405 Pfam Xylanase inhibitor N-terminal 97 257 IPR032861 -
Ssu2g0224 405 PANTHER ASPARTYL PROTEASES 11 403 IPR001461 GO:0004190|GO:0006508
Ssu2g0224 405 Pfam Xylanase inhibitor C-terminal 280 398 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0224 Ssu-Chr2 13016609 13019955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0224 44 348 Miscellaneous Gene Families AT1G77480 26.911 7.79e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0224 - - gmx:100788182 705.286