Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0203 ATGGCATCTATGATTATTGGTGTTGGATCAGTCGAGCAAGACACTACGGCCATGATTTTATCAGGGTTTTTAGTGTTTGTGGCTCAGGCTTGTAGCATAGCCACAGGGGAGTTTATGTCTGTGTCCTCAAAATTGGATAAAAAGGTTGCTccaatgaagagagagaaggaaaaagggcgtagtagagagaaagaagaaggacATTacaatgaagagaaagaaagttggCTAAATTTTTTACAAGCAATAGCAGTCCAAGCTTTAGCCTTTGCTGTTGGTGGAATGGTGCCATTGCTTGCAACCTCCTTGATAAGGAAATATAAGGTGGGGCCTAGAGTGGTTATGGCTACTGCGAGCTTTGCTTTGGTGGTATCTGGTTGGTTACGGGCAGTGTTGGGTAAGACTCCGGTGTGGAAGTCTATTATAATGTTCTTGGTTGAAGGTTGGATATTTATGACCATTCCTTTGGGGCTAAGCATGTTTGGGAAAGTAGACTTTTAG 501 0.3653 MASMIIGVGSVEQDTTAMILSGFLVFVAQACSIATGEFMSVSSKLDKKVAPMKREKEKGRSREKEEGHYNEEKESWLNFLQAIAVQALAFAVGGMVPLLATSLIRKYKVGPRVVMATASFALVVSGWLRAVLGKTPVWKSIIMFLVEGWIFMTIPLGLSMFGKVDF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0203 166 Pfam VIT family 71 155 IPR008217 GO:0005384|GO:0030026
Ssu2g0203 166 Pfam VIT family 2 66 IPR008217 GO:0005384|GO:0030026
Ssu2g0203 166 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 1 161 - -
Ssu2g0203 166 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 1 161 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0203 Ssu-Chr2 11851347 11851847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0203 2 159 Nodulin-like Gene Family AT3G43660 44.937 4.90e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0203 K22736 - gmx:100807991 149.058