Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0196 ATGGCTATGACTGTAGAGGCCCAGTTCCATGTTTTGGCTGTTGATGACAGTCTTATTGACAGAATGTTGATTGAGAGGCTCCTAAAAACCTCTTCCTTTCATGTTACTACAGTGGACTCTGCCACTAAGGCCTTAAAATTTCTTGGTTTGGTTGAAGATGAGTTGAGGACTTTTGGCAATCCTGTTGCATCAGAAATTCAGCAGGATGTAGATGTAAACCTGATCATAACAGATTACTGTATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGATGCTTGGAAGAGGGAGCAGAAGAATTCTTTCTGAAACCAGTTAAACAGGCTGATGTAAACAAGCTCAAACCACATTTGATGAAATCAAGAGCTAAGGAAGAGCAAGACCAACTCTTCAATAACAAAAGGAAGGACATGGAAGAAATCCATTGCCCAAATAAAACCAGATTAAAATGTAGCAGTTAA 540 0.3907 MAMTVEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTTVDSATKALKFLGLVEDELRTFGNPVASEIQQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVKQADVNKLKPHLMKSRAKEEQDQLFNNKRKDMEEIHCPNKTRLKCSS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0196 179 ProSiteProfiles Response regulatory domain profile. 10 145 IPR001789 GO:0000160
Ssu2g0196 179 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 175 IPR045279 GO:0009736
Ssu2g0196 179 Gene3D - 10 174 - -
Ssu2g0196 179 CDD REC_typeA_ARR 11 140 - -
Ssu2g0196 179 SMART REC_2 9 144 IPR001789 GO:0000160
Ssu2g0196 179 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 2 175 - -
Ssu2g0196 179 MobiDBLite consensus disorder prediction 144 163 - -
Ssu2g0196 179 Pfam Response regulator receiver domain 11 137 IPR001789 GO:0000160
Ssu2g0196 179 SUPERFAMILY CheY-like 9 147 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0196 Ssu-Chr2 11326539 11328054 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0196 1 155 Response Regulator Gene Family AT2G41310 65.806 6.87e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g0196 Response_reg 3.8e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0196 K14492 - gmx:100787436 329.331