Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0188 ATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAGATATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACAGATGCTTGGAAGAGGGAGCAGAAGAATTCTTTCTGAAACCAGTTAAACAGGCAGATGCAAACAAGCTTAAGCCACATTTGATGAAATCAAGAGCTAAGGAAGAGCAAGACCAACCTTTCAATAACAAAAGGAAGGACATGGAAGAAATCCATTCCCCAAATAAAACCAGATTAAAATGTAGCAGTTAA 300 0.38 MPGMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVKQADANKLKPHLMKSRAKEEQDQPFNNKRKDMEEIHSPNKTRLKCSS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0188 99 SUPERFAMILY CheY-like 1 56 IPR011006 -
Ssu2g0188 99 Gene3D - 1 96 - -
Ssu2g0188 99 MobiDBLite consensus disorder prediction 64 92 - -
Ssu2g0188 99 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 1 95 - -
Ssu2g0188 99 Pfam Response regulator receiver domain 1 56 IPR001789 GO:0000160
Ssu2g0188 99 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 95 IPR045279 GO:0009736
Ssu2g0188 99 ProSiteProfiles Response regulatory domain profile. 1 65 IPR001789 GO:0000160
Ssu2g0188 99 MobiDBLite consensus disorder prediction 64 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0188 Ssu-Chr2 10937912 10938856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0188 1 76 Response Regulator Gene Family AT2G41310 73.684 4.87e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g0188 Response_reg 5.9e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0188 K14492 - gmx:100787436 193.356