Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0182 ATGAGGTTACATGAAGTCAAACCTCATTTGCATGCTTGTACTGTACTTTTGAATTCCTTGTTGAAGGATGGGGTTACTCACATGGTGTGGAAAATTTATAAGAGAATGGTTCAAGTTGGGGTTGTTCCCAATATGTACATTTACAATTGTTTATTTCATGCTTGTTCCAAATCAGGAGATGTGGAAAGGGCAGAACAGTTATTAAATGATATGGACATAAAGGGTGTGCTTCCTGATATCTTCACATACAATGCTTTGATATCATTATATTGCAGGAAAGGTATGTACTATGAGGCTTTATCCATCCAGGACAGAATGGAAAGAGAGGGGATAAGCCTTGATATTGTTAGTTATAACTCTCTTATTTATGGATTTTGCAAAGAAGGCAGGATGAGAGAAGCTATGAGAATgtttagtgaaataaaaaatgcaactcCCAATCATGTCACATATACTACACTGATTGATGGTTATTGTAAAACAAATGAACTGAAGCATGCCCTGAAAATGCGGGAATTGATGGAGGCTAAGGGATTGTACCCTGGAGTTgttacttataattcaatattgCGCAAGCTGTGTCAAGATGGCAGGATAAGGGATGCAAACAGACTCTTGAATGAGATGAGTGAAAGGAAAATTCAAGCTGACAATATCACATGCAACACACTTATTAATGCTTACTGCAAGATTGGAGATTTGAAATCTGCTTTGAAATTTAAGAACAAGATGTTAGAAGCTGGTCTAAAACCTGATCCATTTACGTATAAGGCACTGATTCATGGATTCTGCAAGGCAAATGAGCTGGAAAGTGCAAAGGAGTTAATGTTCAGCATGCTTGATGCTGGATTTTCCCCCAGTTATTGCACGTACTCATGGACTGTAGATGGCTACAGTAAGAAAGACAATATGGATGCAGTTTTAGCACTGCCAGATGAGTTTCTGAGTAGAGGTCTTTGTCTTGATGTTTCAGTATACAGGGCATTGATTAGAAGGTCATGCAAGGTAGAAAGGATTGAATGTGCAGAAAAGTTATTCAATCATATGGAAGGAAAGGGTATATGTGGTGACAGTGTAATCTACACCAGTCTTGCATATGCTTATTGGATAGTGAGGAAGGCAAGTGCTGCTTCAAGTATATTAGAAGAGATGGCTAGAAGGTTGATGATCACAGTCAAACTTTATAGATGCTTTAGCACTTCTGATGCTAGTGAAAACAAAGTGTCACAGATCTTCTGGAATCATGTGGTGGATAGGGGTCTGATATCGAGAAATACAATGAATAAAATACAGCAGATGCTGATATGA 1308 0.3716 MRLHEVKPHLHACTVLLNSLLKDGVTHMVWKIYKRMVQVGVVPNMYIYNCLFHACSKSGDVERAEQLLNDMDIKGVLPDIFTYNALISLYCRKGMYYEALSIQDRMEREGISLDIVSYNSLIYGFCKEGRMREAMRMFSEIKNATPNHVTYTTLIDGYCKTNELKHALKMRELMEAKGLYPGVVTYNSILRKLCQDGRIRDANRLLNEMSERKIQADNITCNTLINAYCKIGDLKSALKFKNKMLEAGLKPDPFTYKALIHGFCKANELESAKELMFSMLDAGFSPSYCTYSWTVDGYSKKDNMDAVLALPDEFLSRGLCLDVSVYRALIRRSCKVERIECAEKLFNHMEGKGICGDSVIYTSLAYAYWIVRKASAASSILEEMARRLMITVKLYRCFSTSDASENKVSQIFWNHVVDRGLISRNTMNKIQQMLI 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0182 435 SUPERFAMILY TPR-like 117 274 IPR011990 GO:0005515
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Ssu2g0182 435 PANTHER ATPASE EXPRESSION PROTEIN 3 1 430 - -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Ssu2g0182 435 Pfam PPR repeat family 217 265 IPR002885 -
Ssu2g0182 435 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Ssu2g0182 435 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 430 - -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Ssu2g0182 435 Gene3D Tetratricopeptide repeat domain 212 279 IPR011990 GO:0005515
Ssu2g0182 435 Gene3D Tetratricopeptide repeat domain 143 211 IPR011990 GO:0005515
Ssu2g0182 435 Pfam PPR repeat 317 350 IPR002885 -
Ssu2g0182 435 Pfam PPR repeat 177 210 IPR002885 -
Ssu2g0182 435 Pfam PPR repeat 143 175 IPR002885 -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 144 IPR002885 -
Ssu2g0182 435 Gene3D Tetratricopeptide repeat domain 280 432 IPR011990 GO:0005515
Ssu2g0182 435 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Ssu2g0182 435 Pfam Pentatricopeptide repeat domain 4 56 IPR002885 -
Ssu2g0182 435 Pfam Pentatricopeptide repeat domain 67 123 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 325 357 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 46 80 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 184 217 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 81 114 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 149 182 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 12 44 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 116 142 IPR002885 -
Ssu2g0182 435 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0182 Ssu-Chr2 10869176 10870483 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0182 33 425 Glycosyltransferase AT1G05670 32.506 7.32e-69 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0182 - - gmx:100804589 814.298