Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0181 ATGATGTACAATGATCCTCAGCACCAGCACCAGtaccagcaacaacaacaacagcagcagcagcagcagcattTTCACCACCAGCCGCCGGGTCCCGAGTTCCACCGCGGACCGCCGCCACCGTCGCAGCCGCCGCTGGTGATGCGGCAAGGGTCCGCCTCGTCGACGAACCTCGCCCCCGAGTTTCACCACCCTGGCCCCGGAGGACCCGTTCCTCCTCATTACGATGTTCACAGCGATAGCCATGGTGCAAAAAGAATACGAAAGCTTACTCAAAGGAAGGCAGTTGATTATACAAGCACAGTTGTGCGTTATATGCAGATTCGTATGTGGCAGCGGGATTCAAGGGATAGGACAGTACTGCAACCAACCCCAGCAGCAGCAATTGATATGTTGCCAGCTGTTGGCTATCCAGACAATCCATCTACAAGCTTTGCTGCTAAATTTGTTCATACATCGCTAAATAAAAATCGTTGCCCCATTAATCGCGTTCTTtggACTCCAACAGGCCGGCGTCTTATTACTGGCTCACAGACTGGGGAATTCACTCTTTGGAATGGccaatcttttaattttgaaatgattcTTCAGGCTCATGATCAAGCAATCAGATCCATGGTCTGGAGTCACAATGACAACTGGATGGTCTCTGGTGATGATGGGGGTGCAATAAAGTATTGGCAGAACAACATGAACAATGTTAAAGCCAACAAATCTGCTCATAAAGAATCAGTCCGTGACTTAAGTTTCTGTAGGACAGATTTGAAGTTCTGTTCGTGTTCTGATGATACCACAGTTAAAGTTTGGGATTTTGCACGCTGTCAAGAAGAGTGTTCACTAACTGGCCATGGTTGGGATGTGAAGAGTGTTGACTGGCATCCTACAAAATCCCTATTAGACAATCTTGTGAAACTTTGGGATGCTAAAACAGGGAGAGAGCTTTGCTCATTTCATGGCCACAAAAATACTGTGCTGTGTGTCAAATGGAATCAAAATGGCAACTGGGTGTTAACAGCTTCAAAGGATCAAATAATAAAGCTTTATGACATAAGAGCAATGAAGGAGCTTGAATCATTCCGTGGACATCGCAAGGATGTTACTGTTCCATATTATGGTGTTTATAATATTCTCAATGGCACTGGCTCAAGGCATGAAACTCCACAAATTGAAATTCCCAATGCTCATGATAATAATGTGTGGGATCTTGCATGGCATCCTATTGGATACCTTCTGTGCAGTTACATAAAATTTCCTGAAATCTTTTTTGGTAGACATTGTATTCCTCTAATTGATCTGTTGATATCTAAAGAAAGACCATTTGCCCCTGGGTTAACTCGAAATGAGGGTACCATTCCAGGGGTTGGAGTTGCAATGCCCTTATCTATTCCTTCTCTTGACATGCCTCAAGGGGAGCAGAAGCAGCCCCATCCTGTTTCAATGGGTGCTCCTCCTCTTCCCCAGGCTCTACCACCGCAGATGGGTCCTTTGCCTATACCTCCAAATATGCCACAACTACAGCACCCTTCCCATTCACCCTTGGTCCCTCACCAGCATTTGCCTCGCCCTCCACCCCAAATGCCTATTGGCATGCCAGGATCTCTACCAGGGATTTCGTCAGTGCCTACGTCACATCCAATGCCAATGCCAGGTCCAATGGGGATGCAAGGGGCGATGAATCAGATGGGTACTCCAATGCCACAAGGTCCTTATGTGGGCATGAATCAAATGCATTCAGGATCCTTGCCTACAAGTGGAGGGCCGCCTCTTGGTGGTTTTCCAAGCAACTTGCCTAATATGCAAGGGCCATCAAATGCCAATTATCCTCAAGGTGCTTCATTTAACAGACCTCAAGGTGGCCAAATGCCTTTGATGCAAGGGTATAATCCTTACCAGTCTGGTAATCAGTCTGGGATGCCTCCAAGCGCACAACCAGGGGCTTCTCACTCTCAAATGCCTCCATAG 1962 0.4557 MMYNDPQHQHQYQQQQQQQQQQQHFHHQPPGPEFHRGPPPPSQPPLVMRQGSASSTNLAPEFHHPGPGGPVPPHYDVHSDSHGAKRIRKLTQRKAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFAAKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLDNLVKLWDAKTGRELCSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTVPYYGVYNILNGTGSRHETPQIEIPNAHDNNVWDLAWHPIGYLLCSYIKFPEIFFGRHCIPLIDLLISKERPFAPGLTRNEGTIPGVGVAMPLSIPSLDMPQGEQKQPHPVSMGAPPLPQALPPQMGPLPIPPNMPQLQHPSHSPLVPHQHLPRPPPQMPIGMPGSLPGISSVPTSHPMPMPGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPSNLPNMQGPSNANYPQGASFNRPQGGQMPLMQGYNPYQSGNQSGMPPSAQPGASHSQMPP 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 228 - -
Ssu2g0181 653 Pfam WD domain, G-beta repeat 239 270 IPR001680 GO:0005515
Ssu2g0181 653 Pfam WD domain, G-beta repeat 312 349 IPR001680 GO:0005515
Ssu2g0181 653 Pfam WD domain, G-beta repeat 194 227 IPR001680 GO:0005515
Ssu2g0181 653 CDD WD40 158 413 - -
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Ssu2g0181 653 SUPERFAMILY WD40 repeat-like 150 413 IPR036322 GO:0005515
Ssu2g0181 653 MobiDBLite consensus disorder prediction 467 494 - -
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 228 IPR001680 GO:0005515
Ssu2g0181 653 MobiDBLite consensus disorder prediction 32 46 - -
Ssu2g0181 653 MobiDBLite consensus disorder prediction 479 494 - -
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 186 IPR001680 GO:0005515
Ssu2g0181 653 MobiDBLite consensus disorder prediction 579 653 - -
Ssu2g0181 653 MobiDBLite consensus disorder prediction 1 83 - -
Ssu2g0181 653 SMART WD40_4 310 349 IPR001680 GO:0005515
Ssu2g0181 653 SMART WD40_4 273 307 IPR001680 GO:0005515
Ssu2g0181 653 SMART WD40_4 142 186 IPR001680 GO:0005515
Ssu2g0181 653 SMART WD40_4 189 228 IPR001680 GO:0005515
Ssu2g0181 653 SMART WD40_4 231 270 IPR001680 GO:0005515
Ssu2g0181 653 MobiDBLite consensus disorder prediction 596 653 - -
Ssu2g0181 653 PANTHER WD40 REPEAT PROTEIN 76 413 IPR045245 GO:0031124
Ssu2g0181 653 Gene3D - 136 415 IPR015943 GO:0005515
Ssu2g0181 653 MobiDBLite consensus disorder prediction 1 27 - -
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 270 - -
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 270 IPR001680 GO:0005515
Ssu2g0181 653 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 351 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0181 148 447 Miscellaneous Gene Families AT5G08390 22.684 7.85e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0181 K15542 - gmx:100788493 1033.86