Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0174 ATGGAGGAAGCATCACTACAAGGTTTCCCACCAAACAATTTGAAGCAATTGCTGATTTCATGCGCCAATGCCCTGTCTGAGAACAACATGAAAGAGTTTGATCAATTGAAGCATGCAGAAACGAGGACTGCTATACACATCATAGACTTCCAAATTGCTCAGGGAACTCAATGGATAACTCTTCTTCAAGCCCTTGTAGCAAGACTTAGTGGTGCTCCCTATGTAGGGACCATGGGGATTGATGATCCTATTTCTAATTACACTCGTAATGGTGGACTAGATGTTGTTGGGAAAAGATTGGCCTTGATGTCTGAGAAATTCGTCATCCTAGTTGAGTTTCATGGAAtgcctatttttaaattggttctgtcttaa 375 0.3893 MEEASLQGFPPNNLKQLLISCANALSENNMKEFDQLKHAETRTAIHIIDFQIAQGTQWITLLQALVARLSGAPYVGTMGIDDPISNYTRNGGLDVVGKRLALMSEKFVILVEFHGMPIFKLVLS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0174 124 ProSiteProfiles GRAS family profile. 1 124 IPR005202 -
Ssu2g0174 124 Pfam GRAS domain family 38 116 IPR005202 -
Ssu2g0174 124 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 8 37 - -
Ssu2g0174 124 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 44 119 - -
Ssu2g0174 124 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 37 IPR005202 -
Ssu2g0174 124 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 119 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0174 Ssu-Chr2 10167796 10168401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0174 45 115 GRAS Transcription Factor Family AT1G50600 53.521 1.28e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu2g0174 GRAS 1.2e-15 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0174 - - gmx:100799073 117.472