Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0163 ATGTGGGAAAAGGAGTTTCAAACCTGGCAAGTGGAGGACGTACCCCTATATGACTTTTACACAGTGAAGGCAGATGGTAGAAGTCAACAACTACAAGTGTTGAAGCAATGGATGGAGCAGAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGAACCAACAGTACTTCTTCATCTTGCCAGGAGATTTTACTCAAGGTTCCTTCAATTCTGATTTTAGTTGAAGGACACAATCCAAGGAATGAAAACACAGATATGGTACAGTCCCTGGCAAAAGTTCGAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTACCAGAATCATGTCAGGGAGgtgtttaacattttaaatcttGTTCGGACAAAGATTTTGAAGATGGAAACATCTAGACCTATTGTCAGGCGCATCCAGAGCAGAGTTCATATACCAGGTGTGAGAGGCTTCTATGATTTAGTTGAAAACACTTTGCAAGACATggattttaaaaggaaagtggCCATCATACAAGATTTGCATGACATGATGAGGGAGGCAATTCACTATTATAAAGGAGATTTTCTGGATGAGCTTCCTGGTCTTGTTGATTTAACTGTGGTACTCACTCTTAGCCCTAGACAGAAGCCTGaagttgagaaattaaaaaagctaTCTAGAAAGTTCAAGATAAGTTCTGTAGGCAGTGTTGTCTATCTGCATCCTAAACTGAAGCCTCTAGCAGAAAAATGTGgtgaaaattctatttttgataatataatggATGATTTGATAGAGGAATTAGATGTGAGAGATGGTGTCAAATCTAAATTCTTTCACAACATGCTAAATCTTTGTGAATCAGCGGGGGAGAAGCTTCTGGCTTTTAGTCAATATCTGTTGCCTTTGAAATATTTAGAAAGGTTGACTATGAAATGGAAGGGGTGGAGTCttggaaaagaaatttttgtaatCTCAGGAGAATCAAGCTTTGAGCACCGAGAATGGTCTATGGAAAGATTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATGTCACTGGTTGGGGCATCCCGCATAATAATTTTGGACGTTCATCTCAATCCTTCAGTTGCTCGCCAAGCTGTTGGTCGTGCATTCAGACTGGGCCAGAAGAAGAAAGTCATCGTGTATCGATTGGTATCTGCTGATTCTCCAGAAGAGGAAGATCACAGTATTTGTTTCAAGAaggaattaatttcaaaaatgtggTTTGAATGGAACGAGTATTGTGGCGATCGAGCTTTTGAAGTTGAGGCGGTTGAGAATGCTTTGCCTCAGAAGATATAA 1353 0.3747 MWEKEFQTWQVEDVPLYDFYTVKADGRSQQLQVLKQWMEQKSILFLGYKQFSSIVCDNGTNSTSSSCQEILLKVPSILILVEGHNPRNENTDMVQSLAKVRTPRKVVLSGTLYQNHVREVFNILNLVRTKILKMETSRPIVRRIQSRVHIPGVRGFYDLVENTLQDMDFKRKVAIIQDLHDMMREAIHYYKGDFLDELPGLVDLTVVLTLSPRQKPEVEKLKKLSRKFKISSVGSVVYLHPKLKPLAEKCGENSIFDNIMDDLIEELDVRDGVKSKFFHNMLNLCESAGEKLLAFSQYLLPLKYLERLTMKWKGWSLGKEIFVISGESSFEHREWSMERFNNSPDAKVFFGSIKACGEGMSLVGASRIIILDVHLNPSVARQAVGRAFRLGQKKKVIVYRLVSADSPEEEDHSICFKKELISKMWFEWNEYCGDRAFEVEAVENALPQKI 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0163 450 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 443 IPR044567 GO:0080188
Ssu2g0163 450 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 447 IPR001650 -
Ssu2g0163 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 157 IPR027417 -
Ssu2g0163 450 PANTHER PROTEIN CHROMATIN REMODELING 35 2 443 - -
Ssu2g0163 450 Pfam SNF2-related domain 2 212 IPR000330 GO:0005524|GO:0140658
Ssu2g0163 450 Gene3D - 199 447 IPR027417 -
Ssu2g0163 450 Gene3D - 1 149 IPR038718 -
Ssu2g0163 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 427 IPR027417 -
Ssu2g0163 450 SMART helicmild6 306 391 IPR001650 -
Ssu2g0163 450 CDD SF2_C_SNF 274 402 - -
Ssu2g0163 450 Pfam Helicase conserved C-terminal domain 283 391 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0163 Ssu-Chr2 8483519 8485338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0163 288 419 RAD5 or RAD16-like Gene Family AT5G43530 31.818 2.88e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu2g0163 SNF2_N 6.3e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0163 K10875 - gmx:100780454 790.415