Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0154 ATGGAATCCTGCAATTGTATTGACCCACAAGTGCCAGCTGATGACTTATTAATGAAATACCAATATATCTCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAGATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAAcgcatctaattaatttatggaCCTTTAGAATTCATACCAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTGGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACTAGggaattatttttgaagaacaaGGCCGCAGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAAGAAGAAACCGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGCACTCTAGATAGACACACAATACTGAAAACGACTCTTGTTGAACTGGGTAGAACTTTGGCACTAGAGGAATGTGCCTTATGGATGCCAACACGAACTGGGTTGGAGCTTCAACTCTCTTACACATTGCGACAGCAGAACCCAGTTGGATACACAGTACCCATTCATCTTCCTGTGATCAATCAAGTATTTAGTAGCAACAGGGCAGTAAAAATTTCACCTAATTGTCCAGTTGCTAGATTGCGACCTTATACTGGAAAATACATGCCTGGGGCAGTAGTAGCTGTTCGAGTTCCTCTCCTACATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACAAGAAGTTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTGCACGAGTTAGAACTGGTTGAGGTAGTTGCTGACCAGGTAGCTGTTGCTCTTTCACATGCTGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTCATGGAGCAGAATGTTGCATTGGATCTAGCAAGAAGAGAAGCAGAAACTGCAATTCGTGCTCGGAATGACTTTTTGGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCATTGCTACAGGAAACAGATTTGACAGCTGAGCAACGTCTGATGGTGGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACTCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGCAGCAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTGATTAAGCCGGTTGCATCTGTTAAAAAGTTATCACTCACTTTACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAAACGTCTAATGCAAACTATTCTGAATGTTGTTGGTAATGCCGTGAAGTACTCAAAAGAGGGCTGCATTTTCATCACTGCTTTCGTTGCAAAGCCTGAATCCTTTAGAGATGTTAGAATTCCTGACTTTCTTCCAGTGCTAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATTAGGAATTAATCCACAAGATATCCCGAAGTTATTCACCAAGTTTGCACAAAACCAATCATTAACAACAAGAAATCCTGCTGGAAGTGGACTTGGCCTGGCAATTTGTAGGAGGTTTGTAAATCTCATGGAAGGGCATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGTCACTTTTATTGTAAAACTTGGAATCCCAGACCGATCAAATGAATTTAAGCTACCTTTTGTACCTAAAGTCCTGGGAAATCATGGATCTACAAACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGTGATGTTACAACGGCAAGCTCAAGTGAAGAATGTCTGCGTGTTGTTTCTCTGGAACATGAAGTGGTCTTCATGGATGTTTGTACAGGGTTAGATGGTTATGAACTTGCAGTACGTATACATGAGAAGTTTACCAAACATCAAGATAGACCACTAATAGTTGCTCTTACTGGAAACACCAAAAAGGTTACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATATTGAAACCTGTTTCTGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTGGAGCGCCGAGTTCTGTTCGAAACTGTTTAA 2223 0.3999 MESCNCIDPQVPADDLLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFRIHTRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRAVKISPNCPVARLRPYTGKYMPGAVVAVRVPLLHLSNFQIYDWPEVSTRSYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEAATFNLHSLFREVLNLIKPVASVKKLSLTLHLASDLPMYAIGDEKRLMQTILNVVGNAVKYSKEGCIFITAFVAKPESFRDVRIPDFLPVLSDSHFYLRVQVKDSGLGINPQDIPKLFTKFAQNQSLTTRNPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTVTFIVKLGIPDRSNEFKLPFVPKVLGNHGSTNFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLRVVSLEHEVVFMDVCTGLDGYELAVRIHEKFTKHQDRPLIVALTGNTKKVTKENCMRVGMDGLILKPVSVDKMRGVLSELLERRVLFETV 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0154 740 SMART gaf_1 158 317 IPR003018 GO:0005515
Ssu2g0154 740 Gene3D - 608 740 - -
Ssu2g0154 740 Gene3D - 136 308 IPR029016 -
Ssu2g0154 740 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 2 737 - -
Ssu2g0154 740 SMART REC_2 614 727 IPR001789 GO:0000160
Ssu2g0154 740 Gene3D - 408 592 IPR036890 -
Ssu2g0154 740 Pfam Response regulator receiver domain 616 724 IPR001789 GO:0000160
Ssu2g0154 740 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Ssu2g0154 740 SUPERFAMILY CheY-like 610 733 IPR011006 -
Ssu2g0154 740 SMART HKATPase_4 455 587 IPR003594 -
Ssu2g0154 740 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Ssu2g0154 740 CDD REC_ETR-like 614 727 - -
Ssu2g0154 740 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Ssu2g0154 740 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Ssu2g0154 740 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Ssu2g0154 740 ProSiteProfiles Histidine kinase domain profile. 350 587 IPR005467 -
Ssu2g0154 740 SUPERFAMILY GAF domain-like 161 310 - -
Ssu2g0154 740 Gene3D - 309 407 - -
Ssu2g0154 740 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Ssu2g0154 740 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Ssu2g0154 740 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Ssu2g0154 740 Pfam GAF domain 158 307 IPR003018 GO:0005515
Ssu2g0154 740 PANTHER ETHYLENE RECEPTOR 1-LIKE 2 737 - -
Ssu2g0154 740 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 585 IPR036890 -
Ssu2g0154 740 ProSiteProfiles Response regulatory domain profile. 615 731 IPR001789 GO:0000160
Ssu2g0154 740 PIRSF Ethylen_sen_hybr_HK 1 738 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0154 Ssu-Chr2 8272825 8280465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0154 1 738 Miscellaneous Gene Families AT1G66340 82.027 0.0 1235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g0154 GAF 3.4e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0154 K14509 - gmx:100795799 1405.58