Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0139 ATGCCGAGGACTGAACATCTTGATCGTGAAGTTTGCAGAATTGGACATTTTGTAGTGTGCCTTTTGGACTACCAGCCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTACCCTCTCTGCCGCTTCTCCCTACTAACCACTACTAAATCTTCAACACAGACATCTGATATGCAGTCACAGAATAATGAAGAAAGACAAGCCATGGAATTCTCTGAATCAAGATCTGCTAGGCATCTAGAAACCACTGTCCTCCAAAATGTCTCTAGAGAAGTTGCAATCAGCACTCACTGCATTGATGTTGAAGGGAAAAATGTGCAAAACAATCAATAA 384 0.4349 MPRTEHLDREVCRIGHFVVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLATHTTYPLCRFSLLTTTKSSTQTSDMQSQNNEERQAMEFSESRSARHLETTVLQNVSREVAISTHCIDVEGKNVQNNQ 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0139 127 MobiDBLite consensus disorder prediction 69 93 - -
Ssu2g0139 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 63 IPR013083 -
Ssu2g0139 127 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 13 83 - -
Ssu2g0139 127 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 13 83 - -
Ssu2g0139 127 SUPERFAMILY RING/U-box 18 65 - -
Ssu2g0139 127 MobiDBLite consensus disorder prediction 69 84 - -
Ssu2g0139 127 Pfam Ring finger domain 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0139 Ssu-Chr2 7800773 7802264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0139 19 96 C3H Transcription Factor Family AT1G33480 48.718 7.33e-22 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0139 K19039 - gmx:100794211 175.252