Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0138 ATGTCTGAAGGGTATTCGTGCGGGTGTTCGGACTCAGACCCTTCGTGTGGGTGCTGGTCGTCCACCAGATCTGAGGCCTCGACCGAGCTCAAACTCTACCGAGCCTTCATCTTCTGTGTCCCCATCTTCTTCACTCTcattctcctctttctcttctacCTCTTCTACCTCCGACCGCGAAGGCCCCATTGGATGAGACACTTCGGCGTTACACACAGCGCCAACCACAATGCCACCTCCACGGGTGATTTGGGGTTGAAAAAAGAGCTCAGAGAGATGCTGCCCGTTATTGTCTACAGGGAAAGCTTCTCTGTCAAAGATACTCAATGCTCAGTGTGCCTTTTGGACTACCAGCCAGAGGATAGGCTGCAACAGATACCTGCATGTGGCCATACATTTCATATGAGCTGCATTGATCTTTGGCTTGCCACCCACACCACCTGCCCTCTCTGCCGCTTCTCCCTACTAACCACTGCTAAATCTTCAACACAGACGTCCGATATGCTGTCACAGAACAATGAAGAAAGACAAGCCATGGAATTCTCTGAATCAAGATCTACTAGGCATCTAGAAACTAGTGTCCTCCAAAATGTCTCTAGAGAAGTTGCAATCAGCTCTCACTGCATTGATGTTGAagggcaaaatgtgcaaaacaATCAATAA 663 0.463 MSEGYSCGCSDSDPSCGCWSSTRSEASTELKLYRAFIFCVPIFFTLILLFLFYLFYLRPRRPHWMRHFGVTHSANHNATSTGDLGLKKELREMLPVIVYRESFSVKDTQCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLATHTTCPLCRFSLLTTAKSSTQTSDMLSQNNEERQAMEFSESRSTRHLETSVLQNVSREVAISSHCIDVEGQNVQNNQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0138 220 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 17 176 - -
Ssu2g0138 220 SUPERFAMILY RING/U-box 94 157 - -
Ssu2g0138 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 158 IPR013083 -
Ssu2g0138 220 CDD RING-H2_EL5_like 109 152 - -
Ssu2g0138 220 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Ssu2g0138 220 SMART ring_2 110 151 IPR001841 -
Ssu2g0138 220 MobiDBLite consensus disorder prediction 164 187 - -
Ssu2g0138 220 Pfam Ring finger domain 109 152 IPR001841 -
Ssu2g0138 220 PANTHER RING-H2 FINGER PROTEIN ATL7-LIKE 17 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0138 Ssu-Chr2 7730160 7732284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0138 11 156 C3H Transcription Factor Family AT4G10150 54.967 3.71e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0138 K19039 - gmx:100794211 328.561