Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0128 ATGGAAAGAGAGTTTGATGGAGGATACATAAAGAAGGGGCCATGGAGTAGTGAGGAAGATGAGGTGCTGTTGAGACACGTCAGCAAGTATGGTCCAAGGGAATGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCCAACTTGAAGACTGGGTGCAAGTTTACAGCAGAGGAGGAAAGGGTGGTGATAGAGTTACAGGCAGAGTTTGGGAATAAATGGGCCAAAATTGCAACGTATTTGAAAGGGAGAACCGACAATGATGTGAAAAACTTCTGGAGCAGCAGGAGAAAAAGGTTGGAGAGAATGTTGAAGAGGCCACCAACGTCAAAGCCGCAGAAAAACAAGGGAAAAACTCCTCTTAATCAAGTGCAAGTGGATCAAAAGGTTCCTCCATGCAGTTCCAATCAAGTGGAAGAAATCCCTTCTTACCCTACTTCCTACATGGGAAACACCGAGGTGTATGAGATGGTCAACCTACCAGATTTGATAAAGCCGAATTACCAACATTTTGAAAGTGATCACCTCAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGTACAACTTTCCTCTAGTCCCTGAACCACTAATGGACTTTCCACTATTCCCAGAGTGCCAGGACCTTGTTCCGGAGCCCTTTGATCCAAGTTTTATTGATGGGTTCgaagagaaaaaatgttcaGAATGTGTATGCAGCCAGAAGCTTGGGACCAGGTTGCCAAGTCTTGGATTGGAAGGAAATTCTCAAAGTACAAGTTCATATGGCTTATTTAACGACTTCCCAACTGAGATTTTTGAATACTTTGAGCACATTCCGACCTCATCAGAACAATGA 909 0.44 MEREFDGGYIKKGPWSSEEDEVLLRHVSKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERVVIELQAEFGNKWAKIATYLKGRTDNDVKNFWSSRRKRLERMLKRPPTSKPQKNKGKTPLNQVQVDQKVPPCSSNQVEEIPSYPTSYMGNTEVYEMVNLPDLIKPNYQHFESDHLSAVEVEATPLHTVPSFESSSGYNFPLVPEPLMDFPLFPECQDLVPEPFDPSFIDGFEEKKCSECVCSQKLGTRLPSLGLEGNSQSTSSYGLFNDFPTEIFEYFEHIPTSSEQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0128 302 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Ssu2g0128 302 PANTHER TRANSCRIPTION FACTOR DUO1 1 302 - -
Ssu2g0128 302 MobiDBLite consensus disorder prediction 117 136 - -
Ssu2g0128 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Ssu2g0128 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Ssu2g0128 302 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
Ssu2g0128 302 SMART sant 65 113 IPR001005 -
Ssu2g0128 302 SMART sant 11 61 IPR001005 -
Ssu2g0128 302 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Ssu2g0128 302 Pfam Myb-like DNA-binding domain 15 65 - -
Ssu2g0128 302 Gene3D - 67 141 - -
Ssu2g0128 302 CDD SANT 68 107 IPR001005 -
Ssu2g0128 302 Gene3D - 11 64 - -
Ssu2g0128 302 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Ssu2g0128 302 CDD SANT 14 59 IPR001005 -
Ssu2g0128 302 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0128 Ssu-Chr2 7539067 7540972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0128 10 298 MYB Transcription Factor Family AT3G60460 41.772 2.99e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g0128 Myb_DNA-bind_6 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0128 K09422 - gmx:121173231 525.783