Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0125 ATGGACAAGAACATGTGTAGACAAAAGTGCCTTGAAGATTGCTTTTGCACGGTGGCCATATCCGATGAGGGAACATGTTGGAAGAAGAAGTATCCTTTGAGCAATGGAAGGAAGCACCCTAATGTTAATGGAACAGCTCTTGTCAAGGTACCTAATCTTGGCAAGGTACCTGAAACAGATCCGACCAAGGTTGGGACTGGGAGAGGAAAGTCTTCCCTTGTGCTTGTCATATCAATACTGCTTGGGAGCACTGAAGCTTTTGAATCCAAACTGTCAGCTGCAAGTGCAACAACGAGGCGCTTTACATATAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAACGGTCTATAAAGGGGTGTTGACATCAGACACCAGCAGGTATGTTGCTGTGAAGAGGCTAGATAAGGTGGTGCAAGAAGGTGAAAAGGAGTTCAAAACAGAGGTGAGTGTGATTGGACAAACCCACCACAGGAATTTGGTTCGTTTACTTGGTTATTGTGATGAAGGGGAACATCGTCTTCTAGTGTATGAGTATATGAGCAATGGCTCCCTGGCTAGCTTTCTCTTTGGGATCTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGAGGTCTCACATATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCAGAATGTACTCCTAGATGAGTTGTTCACGCCTAGGATTGCTGATTTTGGGTTAGCAAAGTTGTTGTTGGCTGAGCAAACTAGAGCTGCTAAGACGTGTCTGAGAGGGACACCTGGTCACTTTGCACATGAATGGTTTAGGAAAGCTTCAATCACAACCAAAGTAGATGTTTACAGTTTTGGGGTGGTGCTGTTAGAGGTCATATGCTGCAAATCAAGTTTTGCCTTTGCAATGGCAACAATTTGGTGCATTCAAGGGGATCCTTCGCTAAGACCCTCCATGAAGAAGGTTACCCAAATGCTTGAGGACGTTACTGCAGTTTCTGTGCCACCTCGCCCTTCCATGTTCAGTTCATGA 1071 0.451 MDKNMCRQKCLEDCFCTVAISDEGTCWKKKYPLSNGRKHPNVNGTALVKVPNLGKVPETDPTKVGTGRGKSSLVLVISILLGSTEAFESKLSAASATTRRFTYKELEEATTGFKQMLGRGAFGTVYKGVLTSDTSRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLLGYCDEGEHRLLVYEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNVLLDELFTPRIADFGLAKLLLAEQTRAAKTCLRGTPGHFAHEWFRKASITTKVDVYSFGVVLLEVICCKSSFAFAMATIWCIQGDPSLRPSMKKVTQMLEDVTAVSVPPRPSMFSS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0125 356 Gene3D Phosphorylase Kinase; domain 1 80 188 - -
Ssu2g0125 356 SMART serkin_6 111 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0125 356 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 90 317 - -
Ssu2g0125 356 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 84 - -
Ssu2g0125 356 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 316 356 - -
Ssu2g0125 356 Pfam Protein kinase domain 114 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0125 356 Gene3D Transferase(Phosphotransferase) domain 1 189 347 - -
Ssu2g0125 356 ProSitePatterns Protein kinases ATP-binding region signature. 117 141 IPR017441 GO:0005524
Ssu2g0125 356 ProSiteProfiles Protein kinase domain profile. 111 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0125 356 PANTHER - 1 84 - -
Ssu2g0125 356 PANTHER - 316 356 - -
Ssu2g0125 356 PANTHER - 90 317 - -
Ssu2g0125 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Ssu2g0125 356 SUPERFAMILY Protein kinase-like (PK-like) 95 340 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0125 Ssu-Chr2 7461919 7467886 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0125 94 355 Receptor kinase-like Gene Family AT5G38280 38.907 6.22e-63 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0125 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0125 - - gmx:100796323 558.525