Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0118 ATGGAGCTTGATTTGAATCAGGAGCCTTTGGACCCAACTCATGCTTCTTCAGATGGATTTGATTCTTTGTTGGAAGAACTAGAAACTGCCCATGAACATGTGCAGGACCGTATTAGGCGCCTTGAAGTGATAACTTCCAGAGTCAGGCAGCGTCAGAGGTGGCCGCCGGTTCACTCTCCGATCCAAATAACCAACTTTACGGGACAAGCTGGAGCTGAAGCGCCAGCCGAAGCTCGAGATGAAGGAATGGAGCGCCAGGGAGTTGAGGAAAGAGTAGTTGAAAGTGGGAAAGGGTACAAAAGGAAAGGTGCCCATTTAATAGCTAAAGCATTGGGGGTAGAAACAGATGCTAGTAAGGAAGGGGGAAGCACtggaaatttgtttgattgCAATATATGCTTGGAGATGGCAAGAGATCCTGTGTTGACCTGCTGTGGTCACTTGTTTTGTTGGCCCTGCTTCTGTCAGTTGGCATATGTCTATTCAAATGCAAAGGAGTGCCCTGTTTGTAAAGGTGAGGTCACTGAAACTGGCATTATTCCGATTTATGGCAATGCAAGTGCAGGTGGCAATTGTGAGTTGGGGTTAAAAGGAGCTGGTTTGAGAGTTCCTCCTCGACCCATTGCACCCAGAATTGAGAGTTTTAGGCAGCAGCTAATAAGCCAGGGAGCATCTTCTTCTGTAATCCAAAGTATCCGGCGGTTTAATTACCTTATTGGTGGGTTAGGAGCGCGAGTTCAGTCACAAAGCCCCAGTGCTGCAACTGATAGAAATAACGGTTTGCTCACTCAATCTCGCCCGCAGACAGGCAATGATCGAGGTACTGATTCCTCTCCAATTTCATCGTTGTTAGTGCGAGGAGCTGCTTCATTTTCATCCCTTTCATCGGCATTAAATTCTGCAATGGATTCTGCTGAAAGATTAGTTGAGGACCTTGAGTCATATATTCATGATCACCAAGCACGTGATGATGTCAATAGAAGTTCAACTCTTAATGGAAATATTGCTGCAACTGATTCCACAGCTGCAGCTTCTACATCTCCTTTTAGTAGGAATGTTGACACCACTGCTGATATCGGCTCAGAAATCCAGACAACAGATAGTAACTTACAGACTGAGACTAACCCATTGGACCCTTCTTCATCTCACAGTGGAAGCACTCGTGTTTCAACTTCAAGACGAGTTTCAAATGATCGCAGAAGAAGGAGGTCAAGATGA 1218 0.4524 MELDLNQEPLDPTHASSDGFDSLLEELETAHEHVQDRIRRLEVITSRVRQRQRWPPVHSPIQITNFTGQAGAEAPAEARDEGMERQGVEERVVESGKGYKRKGAHLIAKALGVETDASKEGGSTGNLFDCNICLEMARDPVLTCCGHLFCWPCFCQLAYVYSNAKECPVCKGEVTETGIIPIYGNASAGGNCELGLKGAGLRVPPRPIAPRIESFRQQLISQGASSSVIQSIRRFNYLIGGLGARVQSQSPSAATDRNNGLLTQSRPQTGNDRGTDSSPISSLLVRGAASFSSLSSALNSAMDSAERLVEDLESYIHDHQARDDVNRSSTLNGNIAATDSTAAASTSPFSRNVDTTADIGSEIQTTDSNLQTETNPLDPSSSHSGSTRVSTSRRVSNDRRRRRSR 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0118 405 CDD RING-HC_AtRMA_like 128 172 - -
Ssu2g0118 405 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Ssu2g0118 405 SUPERFAMILY RING/U-box 126 183 - -
Ssu2g0118 405 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 389 - -
Ssu2g0118 405 Pfam zinc-RING finger domain 130 171 IPR001841 -
Ssu2g0118 405 MobiDBLite consensus disorder prediction 248 280 - -
Ssu2g0118 405 Coils Coil 24 44 - -
Ssu2g0118 405 Coils Coil 302 322 - -
Ssu2g0118 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 389 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu2g0118 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 184 IPR013083 -
Ssu2g0118 405 MobiDBLite consensus disorder prediction 364 392 - -
Ssu2g0118 405 SMART ring_2 130 170 IPR001841 -
Ssu2g0118 405 MobiDBLite consensus disorder prediction 364 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0118 Ssu-Chr2 7246436 7247653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0118 61 235 C3H Transcription Factor Family AT3G58030 41.143 1.85e-35 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0118 K10666 - gmx:100793230 572.392