Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0117 ATGACGACTCGAATAGCGCCAGGTGTGGGAGCCAATTTGCTGGGTCAACACGCCGCCGAGAGGAATCAAGACGCCACTGCTTATGTCGGCAATCTCGACCCTCAGATAAGCGAGGAGTTATTGTGGGAGTTGTTTGTTCAGGCTGGTCCAGTCGTTAATGTCTATGTTCCAAAGGATAGAGTGACCAACCAACATCAGGGTTATGGATTTGTTGAATTCCGGAGTGAAGAAGATGCTGACTATGCAATCAAGGTGCTTAACATGATTAAACTTTATGGAAAACCGATACGCGTGAATAAGGCATCCCAAGATAAAAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCGAAGATCATGAGAGATCCTGAGACAGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCTGCAGAAAGAGTTTTGGCTGCAAGTAATCCAAGTGCACAGAAGAGCAGGCCTCATACTTTGTTTGCCAGTGGCCCTCCAACACTTCCCAGTGTTCCTCAGGCTAATGGGGTTGCTCCAGTGCCTCCCCGACCCTTTGCCAATGGGGTCGCTCCTGCTGCGATTCCTGGCCTCCGTCCACCACCCCCTCAACCTGCAGCATTCCAGCCTATGCCGGTGGCTGGACAACCAACATGGCATCAGCAACAGCCTGGTCAAACAATCTTACCACCACCCGTAATGCCGCCTCCACCTCAAGTTCAGCAGTTCAGGCCACCTCACCCCAATATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGACCTCTTCCACCACCAGCAGTAACTGGCAAGTCAGCCACCGCCTGTTTGGCGACCGCCACCACCTCAGCAACAGGGTGGACGGCCTATGCCATACCCTCAGTCCTCAATGCCGCCGCCGCCACCTCCCCAGTAGCACTGCAATGCAACAATCATATGGAATGTTCCTGA 1137 0.5013 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAQKSRPHTLFASGPPTLPSVPQANGVAPVPPRPFANGVAPAAIPGLRPPPPQPAAFQPMPVAGQPTWHQQQPGQTILPPPVMPPPPQVQQFRPPHPNMQQMPPPPQAPPRPLPPPAVTGKSATACLATATTSATGWTAYAIPSVLNAAAATSPVALQCNNHMECS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0117 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Ssu2g0117 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Ssu2g0117 378 CDD RRM2_SF3B4 111 193 IPR034159 -
Ssu2g0117 378 Gene3D - 111 200 IPR012677 -
Ssu2g0117 378 CDD RRM1_SF3B4 28 100 IPR034158 -
Ssu2g0117 378 PANTHER TRANSFORMER-2-RELATED 1 332 - -
Ssu2g0117 378 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 332 - -
Ssu2g0117 378 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Ssu2g0117 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Ssu2g0117 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Ssu2g0117 378 Gene3D - 16 110 IPR012677 -
Ssu2g0117 378 MobiDBLite consensus disorder prediction 289 329 - -
Ssu2g0117 378 MobiDBLite consensus disorder prediction 208 232 - -
Ssu2g0117 378 MobiDBLite consensus disorder prediction 276 332 - -
Ssu2g0117 378 MobiDBLite consensus disorder prediction 194 236 - -
Ssu2g0117 378 SMART rrm1_1 26 99 IPR000504 GO:0003723
Ssu2g0117 378 SMART rrm1_1 113 187 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0117 Ssu-Chr2 7234735 7241604 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0117 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0117 K12831 - gmx:100791039 563.918