Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0116 atgtctcacCGGAAGTTCGAGCACCCGAGGCACGGTTCCCTCGGCTTTCTTCCTAGGAAGCGAGCTTCTCGTCATCGTGGAAAGGTGAAGGCTTTCCCAAAAGACAATCCTAGTCAACCATGCAGGTTGACTGCCTTTGTGGGCTACAAGGCTGGGATGACCCACATTGTTAGAGAGGTTGAAAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATTGAAACTCCTCCACTGGTTGTTGTTGGAGTGGTGGGATATGTGAAGACAACTCGTGGCCTTCGCACGCTGAATACTGTTTGGGCTCAGCATCTAAGTGAAGAAGTCAAGAGACGATTTTACAAGAACTGGTGCAAATCTAAAAAGAAGGCTTTTaccaaatatacaaaaaaatatgaaactgaggaaggaaagaaagataTTGAATCTCAGCTTGAGAAATTGAAGAAGTATGCAACTGTCATTCGTGTTCTGGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAGAAGAAAGCACATTTGATGGAGATCCAAGTTAATGGTGGGACAGTAGCCCAGAAGGTGGACTATGCATACAGCTTCTTTGAGAAGCAAATCCCAGTGGATGCTGTTTTCCAAAAAGATGAGATGATAGATATCATTGGTGTGACTAAGGGTAAAGGTTATGAAGGTGTTGTAACTCGATGGGGTGTCACTCGCCTTCCTCGCAAGACTCACAGAGGTCTAAGAAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCTCGTGTTTCTTTCACAGTCGCCAGGGCTGGTCAGAATGGATATCATCATCGTACTGAGTTGAATAAAAAGATCTACAAGGTTGCCAAGGCAGGTCAAGAGTCACATACAGCCATCACTGAATTTGACAGGACCGAGAAGGATATTACTCCCATGGGTGGATTCCCTCATTATGGCGTGGTGAGGGATGATTATATTATGGTCAAGGGATGCTGTGTTGGACCCAAGAAGCGGGTTCTCACGCTTCGTCAGTCCCTTCTCAAGCAGACATCTCGAGTGGCTCTTGAAGAGATCAAACTGAAGTTCGTTGACACCTCATCCAAGTTTGGACATGGCCGCTTCCAGACCACTCAGGAGAAACAAAAGTTTTATGGTCGGTTGAAGGcgtaa 1170 0.4385 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDNPSQPCRLTAFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVVVGVVGYVKTTRGLRTLNTVWAQHLSEEVKRRFYKNWCKSKKKAFTKYTKKYETEEGKKDIESQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTVAQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVAKAGQESHTAITEFDRTEKDITPMGGFPHYGVVRDDYIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFVDTSSKFGHGRFQTTQEKQKFYGRLKA 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0116 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Ssu2g0116 389 MobiDBLite consensus disorder prediction 1 36 - -
Ssu2g0116 389 Gene3D Translation factors 44 385 - -
Ssu2g0116 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
Ssu2g0116 389 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 389 - -
Ssu2g0116 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Ssu2g0116 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Ssu2g0116 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Ssu2g0116 389 Gene3D - 83 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0116 Ssu-Chr2 7225746 7229626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0116 1 386 Cytoplasmic Ribosomal Protein Gene Family AT1G61580 85.492 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0116 K02925 - gmx:100792174 749.584