Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0110 ATGGCCTCTTCAACTTTTCTTCATTCCTATTCTCTGCTTCTTCTAATATTTCTCCCCTATGTGTTTGGAGATACTGCTTCCAACTGTAGTGCTACCAGTGTACAATTAAATTCCTCTCTAGTCACCAATGACACAGATTCATGGAATTCATCGTCTGGGGAATTTGCCTTTGGTTTCCGAAGTGTTTTATTCGACGACAAGGAATTCAAGTCCGTGCTCGCCGTTTGGTTTGCCAAAGACCCCAACCGAACCATAGTATGGTACgcaaaaccaaaacaaagtaGTCCTGGTTTTCCTTCAGGGTCCACAGTGAACCTGACAAGCAAAGGAATTGCAGTATACAACCCAAAGGGCCATGAGATATTGTGGCAGCGTCCAGAGAACAACGCTATTGTCTCAGTAAGATGTGCTTCTATGCTAGACAAAGGAAGTTTTGCGCTTCTGGATGAGGGTGGGAAGCAGGTTTGGGAGAGCTTTGAAGAGCCCACTGATACCATTTTGCCCGGTCAGAATCTGACTAAGCCTAAAACCTTCAGGGCCCGTCAATCTGACACCAGTTTATATAATGGGAGTTTTGAACTCGATTGGCAGGGCGATAGCAATTTGGTTCTTTACCATTCGCCACAATCAAGCGATGAAACAGTTCAATCCCCAACGCGTGAAGCTTACTGGGCCACCGGAACTTTCAATACTGAATCACAGCTCATCTTCGACGAGTCTGGACACATGTACATAGTAAATGACACGGGTGTTGTGATCAGTGAAGTCCTAAACGGTGGGTCGGAAGAGTTCTTCTACATGGCTAGAATTGATCCTGATGGGGTTTTCAGACTATATCGGCACAGGAAAGGTGAGAACAACGTTGCTGATAGCTGCAGTTCGGCGTGGTGGAGTGTGGTTCAACATTATCCGTCAGATATTTGTCTTTCCTTCGCCAAGCAAACTGGGAATGTTATCTGTGGTTATAACAGCTACTGTGTCAACATCAATGGGGAGCCTGATTGTCTGTGCCCAGATCATTATTCTCCTTTTCAACATGACAATCTCACAGGCTGTAGACCAGATTTTCCACTGCCAAGCTGCAACATAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCATAGAGTATAAAAATGTGGACTGGCCTCTCTCTGATTATGATTTGTTGATTGGAACTGCGATGGACAAGAATATGTGTAGACAAAAGTGCCTTGAGGATTGCTTTTGCGCGGTGGCCATATATGACCAGGAAAGATGTTGGAAGAAGAAGTATCCTTTGAGCAACGGAAGGAAGCACCTTAGTGTTACTAGAATAGCTCTTGTCAAGGTGCCTAAGACAGATTTGAACAAGGGTGGGGGAGAAAAGTCTACCATTGTGCTTGTCATATCAATACTGCTTGGGAGCTCAGTGTTCCTCAATGTCCTTCTATTTGTTGCCTTGTTTGCGGCCGCGACAATAAGACACTTTACATACAAGGAGCTCGAGGAAGCAACCACGGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAACGGTCTATAAAGGGGTGTTGACATCATACACGAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTGGTGCAAGAAGGTGAAAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGGAATTTGGTTCGTTTACTTGGTTATTGTGATGAAGGAGAGCATCGTCTTCTAGTGTATGAGTACATGAGCAATGGCTCCTTGGCAAGCTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAGAGAGTGCAAATTGCTTTGGGGATTGCAAGGGGCCTCACGTATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCAGAACATACTCCTGGATGAGTTGTTCACGCCTAGGATTGCCGATTTTGGGTTGGCAAAGTTGTTGTTGGCTGAACAAACTAGAGCTGCCAAGACGGGTTTGAGAGGGACAGTTGGTTACTTTGCACCTGAATGGTTTAGGAAGGCTTCGATCACAACTAAAGTAGATGTTTATAGTTTTGGAGTGGTGCTGCTAGAGATCATATGTTGCAAGTCAAGTGTTGCCTTTGCAGTGGCTAGTGACGAAGAGGCGCTCATAGATTGGGCTTATCGTTGTTATGGCCAAGGGAAGGTGGCTAAATTGGTAGAAAATGATGAGGAGGCAATGAATGACATAAAGAGGGTGGAAAAGGTTGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCGCTAAGACCTTCCATGAAGAAGGTTACCCAAATGCTTGAGGGTGTTACGACAGTTTCTATGCCTCCTCGCCCTTCCATGTTCAGTTCCTCATCATTTGAAACTTCATTTACTTTGTAA 2394 0.4461 MASSTFLHSYSLLLLIFLPYVFGDTASNCSATSVQLNSSLVTNDTDSWNSSSGEFAFGFRSVLFDDKEFKSVLAVWFAKDPNRTIVWYAKPKQSSPGFPSGSTVNLTSKGIAVYNPKGHEILWQRPENNAIVSVRCASMLDKGSFALLDEGGKQVWESFEEPTDTILPGQNLTKPKTFRARQSDTSLYNGSFELDWQGDSNLVLYHSPQSSDETVQSPTREAYWATGTFNTESQLIFDESGHMYIVNDTGVVISEVLNGGSEEFFYMARIDPDGVFRLYRHRKGENNVADSCSSAWWSVVQHYPSDICLSFAKQTGNVICGYNSYCVNINGEPDCLCPDHYSPFQHDNLTGCRPDFPLPSCNIDGWEQNKDLVDFIEYKNVDWPLSDYDLLIGTAMDKNMCRQKCLEDCFCAVAIYDQERCWKKKYPLSNGRKHLSVTRIALVKVPKTDLNKGGGEKSTIVLVISILLGSSVFLNVLLFVALFAAATIRHFTYKELEEATTGFKQMLGRGAFGTVYKGVLTSYTSRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLLGYCDEGEHRLLVYEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDELFTPRIADFGLAKLLLAEQTRAAKTGLRGTVGYFAPEWFRKASITTKVDVYSFGVVLLEIICCKSSVAFAVASDEEALIDWAYRCYGQGKVAKLVENDEEAMNDIKRVEKVVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSMPPRPSMFSSSSFETSFTL 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0110 797 SMART serkin_6 501 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0110 797 ProSiteProfiles Protein kinase domain profile. 501 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g0110 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 229 IPR036426 -
Ssu2g0110 797 SUPERFAMILY Protein kinase-like (PK-like) 486 772 IPR011009 -
Ssu2g0110 797 ProSiteProfiles Bulb-type lectin domain profile. 33 160 IPR001480 -
Ssu2g0110 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 182 281 IPR036426 -
Ssu2g0110 797 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Ssu2g0110 797 SMART blect_4 169 288 IPR001480 -
Ssu2g0110 797 SMART blect_4 37 162 IPR001480 -
Ssu2g0110 797 ProSitePatterns Protein kinases ATP-binding region signature. 507 531 IPR017441 GO:0005524
Ssu2g0110 797 PANTHER - 2 793 - -
Ssu2g0110 797 CDD PAN_AP_plant 367 446 - -
Ssu2g0110 797 Gene3D - 161 288 IPR036426 -
Ssu2g0110 797 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 793 - -
Ssu2g0110 797 Pfam Protein tyrosine and serine/threonine kinase 503 771 IPR001245 GO:0004672|GO:0006468
Ssu2g0110 797 PIRSF SRK 3 796 IPR024171 GO:0004674
Ssu2g0110 797 CDD STKc_IRAK 507 773 - -
Ssu2g0110 797 Gene3D - 28 160 IPR036426 -
Ssu2g0110 797 Pfam D-mannose binding lectin 84 182 IPR001480 -
Ssu2g0110 797 Gene3D Transferase(Phosphotransferase) domain 1 579 780 - -
Ssu2g0110 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0110 Ssu-Chr2 7098915 7102010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0110 488 773 Receptor kinase-like Gene Family AT1G60800 44.218 3.96e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu2g0110 PK_Tyr_Ser-Thr 5.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0110 - - gmx:100796323 1304.27