Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0105 ATGGCAAATGGTTATGCACCAGTATTCTCAGATTTCAGCTACGATGTTTTTCTGAGTTTTAGTGGCGGAACCAGCAACGCTTTTGTTGATCCTCTCCGTCGAGCCTTGCGCGACAAAGGAATCAGCGTCGTCACGTCAGAAGATGGCAAAACTAGACCTGCCAATGAGGAAATTGAAAAATCCAAAATGGCAATGGTCGTGCTGTGTCAAAACTATGCACTTTCCACCGAGTCCCTTGATGAACTGGCCAAGATCCGTGAGTATGTTGACAGCAAAAGAAAACAGGTTTGGGCTATTTTTTACAAAGTGGAACCATCAGATGTACGGAAACAAAAAGAATCTTATAAAAAAGCCATGGATGGTCATGAAATGAAATTCGGAAAAGACTCGAAGAAGGTAAAAGAATGGAGGGAAGCTTTGACTAGAGTATGTGACCTAAGCGGAAAACATTGCAAGGATGATATGTTTGAAGCTGAACTTGAGGAGATTGTTGAAGCTGCATCCTCTAAATTAGCTCCTGTGCCTGTACAAATGAACCATGTAGTTGGACTTGATTATCACTTTGAACAAGTGAAATCATTTATAGATGTTGAGTCCAGTGATACCGTTCACATGTTGGGAATTTATGGAGCTGGAGGAATAGGCAAAACCACGCTTGCCGCCTATCTATATGAAAAGATTAGACATTATTATTTTGAAGCTACAAGTTTTCTGATTAAAGTCAGAGAAAATCCAAACAAAAGTATGAATCTCTTGGAAGATCTCCAAAAAACACTTCTATCTCTGATGGGTGTACAGACAGAAACCATGATGGGAAGTACAAATAAAGGAGAAGTTGAAATCAAACGCAGGCTTGGCCATAGAAGAGTTCTTCTAGTTTTGGATGATGTTGATTCGAAAGAACAAATGGAATCACTGGTTGGAAAACATGATTGGTTTGGTTCCGGCAGTAGGATCATTGTAACAACAAGAGATGTAGCTGTGCTAGATTATGATGCTggaattaagaaatataaaatggaGGAGCTAAATGACTGTGACTCTCTTGAACTCTTCTGTTGGAATGCTTTTGATATGCCTGGACCTGCAAAACACTTTGAAAATATTTCTCATCGTGCAATAGGTTATGCAAAGGGTATCCCTTTGGCTTTACAAGTAATAGGATCCAATTTGAAAGGAAGAAGCATAGAGGAATGGGAAATTGAATTGGGAAATTATAGGAAGGTTCCAAATGCTGAGATTCAAGATGTACTAGAAATAAGCTACTATAGCCTGCCTGAGCCAGAGATGAAAATATTCTTGGACATTGCTTGTTTTTTCAAAGGGGAGAAATCGAATTATGTTAAAAGGATATTGAAGGCTTCTGATATAAGTTTTAAAGTACTTGCTTGTAAATGTCTAATAATAGTTGATGAAAATGGCTGCTTGGAGATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGGAAGCAGTCGCCATTAAACCCTGGTAACCGTAGTAGATTATGGTCTCATGAAGACATTCTTCTTGTACTGAAAGACAACTCAGGAAGTAGTACAATCGAAGGAATTATGCTCCATCCCCCTAAACTTGAAAAAGTAGATAATTGGACTAATACTGCCTTTGAGAAGATGAAGAATCTCAGAATTCTTATTGTTCGGAATACAAAATTTTCCACAGGACCTAGTTATCTACCGAATAATTTACGACTCCTCGATTGGATAGAATTCCCATCAGAGTCTTTTCCACCTAATTTTTATCCTGAGAATATTGTTGACTTCAAGTTATCTCATAGTCCTCTGGTATCGGTAAAGCCACTTCAAAAGgTATTTCAGGATTTGACTTTTGTCAATCTCTCCAAGTGTCAATTCATAACTCTACCTAGCATGTATGAAGCTAAAAACTTAAGAGTATTGACAATGGACAAATGCCATAACTTGGAAGGGTTTCATCAATCTGTTGGGCATATGCCTAACCTTGTATATTTAAGTGCATCAGAGTGCACCATGCTCAGGAGTTTTGTGCCAAAAATGTATTTGCCATCTCTGGAAATGCTTTCATTTAACTTTTGCAGTAAACTTGAAGAATTCCCAGAAGTAGTGAGAGAGATGGATAAGCCATTAAAGATTCACATGATAAATACCGCTATTAAGAAGTTTCCAAAGTCCATTTGTAAACTTACAGGGCTTGAGTATGTAGACATGTCAACCTGCAGAGGACTCAAGGATTTCTCAAGTTTTGTACCATTGCCAGAACTTGTCACATTAAAGATGAATGGATGTTTTCAACTTGCAGAATCATTTAAAATGTTCAGAAAGAGCCATTCCACAGCAAATAACTGCCCAAGTTTAAAGGCATTATATTTAAGCAGGACTAATCTGTCATATGAAGATCTTTCCATAATTCTTGAAATATTTCCAAAATTGGAATACTTGAATGTATCCCACAATGAATTTGAATCCCTCCCAGAATGCATCAAAGGATTATTGCAGTTGAAAAATCTTGATGTAAGTTTTTGCAGGAGTCTTAGGGAAATTCCAGAACTTCCGTTAAGTATTCAAACAGTTGATGCAAGATACTGTCAATCCTTAACTAAAAAGGCATCAAGCGTGCTGTTGTCTAAGGTTTATAAAGAAATGGAAAGAATACAAGTTGTGATGCCAGAAACTGAAATTCCAAAGCAGTTTGACTGTACTGACAGGGAAGATATTCCACTTTTCTGGGCTCGCCGGAAGTTTCCTGTTGTTGCTTTAGCATTTTTGTTCAAGAAAGTAAAAATGAATGATGATATACAGATGGATACCTCTGAATTGTTGCCTGGAGTTGTATCAGCTGAGGAGTCCTACACTGTTGGCCTGAACTTGTTTATAGATGGCCAAGAAATATGTCGCGAAGATCACCATTATTGCAGTGTTGGGGATCATCATGTGTTAGTATGTGATCTACAGGTTTTGTTCAATGATGAAGAGTCGCATGGTCTTGATGCATATCTTGGAGATGACTGGAAGCCCATTCAGGTTCAATGTGAATCAACATTGATTCTAAGTCACTGGGGAGTTTATGTGTACAAGCAGAAAACAAACACTGATATTCGATTTGGCTCTCCCAATTCAACAAGTTTGGTTTCAAAAACAAGTCCACATGAGAAAACAAGACATGAACAAAATTATgatgtaatagaaaaatttgGCCAGAACttgaattcatttaaatttgagcaaactGCCTCTGTTGCCAACGCTCTATTGAGCTGGTGGAGGAACACCAAGGCTGATATTAGGGGGGAAGTTTCAGCCTCTACCTATGAGGCAAGTTTACTGCAAGAACATGAAGATGTTGTCTGGGATGTGGCACAGATTTTGGAGACGCTGATGGAGAATTTGCCAATATATATTACTGATTCAGAAGTTCAAAGAACAGGCAAATTGGTGGTTGAATTATTGGTTGCACAGACACAACATATGAAGGAATATGACCATGAGAAGTTGCCTAATCTAACTATGCCTATTATTCTAGTGGAATGTGAATGTCACCCTTGGACAGATCTAGAAGGAGCTCAAAGCTTTCGCTATTGGGGAACTGTGGAGCTAAAAGAAGGAGACCGACTTGTGTGGAAAATTTGGAAGAGCAATGAAGCCTTGAGGCTAAATTACACTGTTCTGTTGAAATGTGAGCATCACTCTACTGTGGAAGCTTCAAGCTCGGGCAATGGGGAATCCTTGGAAAAAGAATACAATGATCCTGCATTGCAAGCATTGATGAGGAGGATAGAAGAGGACGCTATGAGGTTGAATAAATCTTATGGGAAGCTGAAGGCTTCCATTGTTCCAACGGATGTTCCAGTCTCTGACAAATATCTTATGGAAACGGCAATCATTAGAGGACTAGAAATATTGGGAAGGTTGGAGTCTAATTTCAACAAGACAGATTATGGGAAATTGAGGGTGGAGCATGATGCTCATAGCACTACTCATATGCAGCATGAGTTAAGGATGGAACGTGGTGCTCAGAGCTCTACTCAGAAAAAGAATAACTTGGGTTGGATCAGATCATTATTAGGTGGATTCGGGAGGCAAAGGAGGTGA 4092 0.3839 MANGYAPVFSDFSYDVFLSFSGGTSNAFVDPLRRALRDKGISVVTSEDGKTRPANEEIEKSKMAMVVLCQNYALSTESLDELAKIREYVDSKRKQVWAIFYKVEPSDVRKQKESYKKAMDGHEMKFGKDSKKVKEWREALTRVCDLSGKHCKDDMFEAELEEIVEAASSKLAPVPVQMNHVVGLDYHFEQVKSFIDVESSDTVHMLGIYGAGGIGKTTLAAYLYEKIRHYYFEATSFLIKVRENPNKSMNLLEDLQKTLLSLMGVQTETMMGSTNKGEVEIKRRLGHRRVLLVLDDVDSKEQMESLVGKHDWFGSGSRIIVTTRDVAVLDYDAGIKKYKMEELNDCDSLELFCWNAFDMPGPAKHFENISHRAIGYAKGIPLALQVIGSNLKGRSIEEWEIELGNYRKVPNAEIQDVLEISYYSLPEPEMKIFLDIACFFKGEKSNYVKRILKASDISFKVLACKCLIIVDENGCLEMHDLIQDMGREIVRKQSPLNPGNRSRLWSHEDILLVLKDNSGSSTIEGIMLHPPKLEKVDNWTNTAFEKMKNLRILIVRNTKFSTGPSYLPNNLRLLDWIEFPSESFPPNFYPENIVDFKLSHSPLVSVKPLQKVFQDLTFVNLSKCQFITLPSMYEAKNLRVLTMDKCHNLEGFHQSVGHMPNLVYLSASECTMLRSFVPKMYLPSLEMLSFNFCSKLEEFPEVVREMDKPLKIHMINTAIKKFPKSICKLTGLEYVDMSTCRGLKDFSSFVPLPELVTLKMNGCFQLAESFKMFRKSHSTANNCPSLKALYLSRTNLSYEDLSIILEIFPKLEYLNVSHNEFESLPECIKGLLQLKNLDVSFCRSLREIPELPLSIQTVDARYCQSLTKKASSVLLSKVYKEMERIQVVMPETEIPKQFDCTDREDIPLFWARRKFPVVALAFLFKKVKMNDDIQMDTSELLPGVVSAEESYTVGLNLFIDGQEICREDHHYCSVGDHHVLVCDLQVLFNDEESHGLDAYLGDDWKPIQVQCESTLILSHWGVYVYKQKTNTDIRFGSPNSTSLVSKTSPHEKTRHEQNYDVIEKFGQNLNSFKFEQTASVANALLSWWRNTKADIRGEVSASTYEASLLQEHEDVVWDVAQILETLMENLPIYITDSEVQRTGKLVVELLVAQTQHMKEYDHEKLPNLTMPIILVECECHPWTDLEGAQSFRYWGTVELKEGDRLVWKIWKSNEALRLNYTVLLKCEHHSTVEASSSGNGESLEKEYNDPALQALMRRIEEDAMRLNKSYGKLKASIVPTDVPVSDKYLMETAIIRGLEILGRLESNFNKTDYGKLRVEHDAHSTTHMQHELRMERGAQSSTQKKNNLGWIRSLLGGFGRQRR 1363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0105 1363 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 148 IPR035897 -
Ssu2g0105 1363 Gene3D - 9 170 IPR035897 -
Ssu2g0105 1363 SMART LRR_bac_2 831 851 - -
Ssu2g0105 1363 SMART LRR_bac_2 808 827 - -
Ssu2g0105 1363 PRINTS Disease resistance protein signature 377 391 - -
Ssu2g0105 1363 PRINTS Disease resistance protein signature 205 220 - -
Ssu2g0105 1363 PRINTS Disease resistance protein signature 829 845 - -
Ssu2g0105 1363 PRINTS Disease resistance protein signature 284 298 - -
Ssu2g0105 1363 Gene3D Ribonuclease Inhibitor 713 884 IPR032675 -
Ssu2g0105 1363 Gene3D Ribonuclease Inhibitor 512 712 IPR032675 -
Ssu2g0105 1363 ProSiteProfiles TIR domain profile. 12 171 IPR000157 GO:0007165
Ssu2g0105 1363 Gene3D - 342 426 IPR042197 -
Ssu2g0105 1363 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1044 - -
Ssu2g0105 1363 Pfam TIR domain 14 151 IPR000157 GO:0007165
Ssu2g0105 1363 SMART till_3 13 146 IPR000157 GO:0007165
Ssu2g0105 1363 Pfam NB-ARC domain 185 400 IPR002182 GO:0043531
Ssu2g0105 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 436 IPR027417 -
Ssu2g0105 1363 SUPERFAMILY L domain-like 498 868 - -
Ssu2g0105 1363 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1044 IPR044974 GO:0006952
Ssu2g0105 1363 Gene3D - 171 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0105 Ssu-Chr2 6934873 6940219 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0105 2 796 WRKY Transcription Factor Family AT4G12020 29.060 3.08e-72 265