LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0103	ATGGCAAATTTGAGTCATGATGCAACATCCCCGGATGATTTTTTCTATGATGTTTTTCTGAGCTTCAGAGGTGGAACCCGTTACGGGTTCACAGATCATCTCTACAATGCTTTGCGCCGAAAGGGAATCTACACTTTCAGAGATACTGAGGAGCTTAAGATTGGGGCGGAAATCAGACCCGCTCTTCTGAAGGCAATCGAAAATTCTAGAATGTCAATGGTTGTGCTGTGTAAAGACTATGCATCTTCCACTTGGTGCCTTGACGAACTTGCCAAGATCATTGACTGCTATCATGCTAACAAAGGGAAACAGGTTCTGATGATATTTTACAAAGTGGAACCTTCTGACGTGTGGGACCAGAAAAATTCGTACGCAGAAGCCATGGTTGAGCATGAAAAGAGATTCGGAAAAGACTCGGAGAAGGTGAGAAAATGGAGGCAAGCTTTGGCAAAAGTGCGCGACCTGACCGCAGAGCATTGCGAGGACCATGAGTATGAACCTGGACTTATCAAGAAGATTGTTAAAGACACCTCCGCTAAATTACCTCCAATTCCTTTACCAATTAAACATGTAGTTGGAGTTGATTCGCGGTTTCAAGAGGTGAAACCAATGATAGATATTGAGTCTCATGATTCCGTCCGCATCATAGAAATTTATGGAGCTGGTGGAATTGGCAAAACTACATTGGCCTTggatatatataacaatatcaGACATCAATTTGAGGCTGCAAGTTTTCTTGCTAATGTCagagaaaaatcaaacaaaagcaCTAAAGGCCTGGAAGATCTCCAAAAGACACTTCTATCTGAGATGGGTGAAGAGACAGAAGTCATGATGGGCAATACTTTTAAAGGGGCCAATGAAATCAAACGCAGACTTGGTCATAAAAAGGTTCTTTTGGTTTTGGATGATGTTGATACAATAAAACAATTGGAGTCCTTAGTTGGAGGAGGTGATTGGTTTGGTTCCGGTAGTAGGATCATTATAACATCAAGGGATACAACATTGCTAGATAAGCATGTCATTAATGATGTtatcattcaaaaatatgaaatgaaggAGCTAAATGATCATGACTCTCTTGAACTCTTTTGTTGGCATGCCTTTAATATGAGCGAACCTGCAGAAAATTATGAAGGTGTTTCTAATCGTGCAGTGGGTTATGCAAAAGGTCTTCCATTAGCTTTAAAAGTAATAGGCTCCAATCTAAAGGGTGGGAGCCTAGAGGATTGGGATATGGAATTGGACAAATATGAAAAGGTTCCAAATGCCAAGATTCAAGAAGTACTTGAAATAAGCTACCATAGCTTATATGACTTGGACCAGAAAATTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAGATGGGAATACGTTGAAAGGATACTAAAGGCATGTGATTTCTTCCCAAGTATTCGAGTATTTATTGTGAAATGTCTCATAACTATTGATGAAAACGGCTGCTTGGATATGCATGACCTAATACAAGTCATGGGTAGAGAGATTGTTAGAAAGGAGTCATCATTAAATGTTGGGGATCGTACCAGATTATGGTCTCATAAGGAAGTTCTTCGAGTACTTAAGGAAAACTCAGGAAGCAATAAAATTGAAGGAATAATGCTTGATCCTCCCAGTCATGAAGAGGTATGTGATTGGATAGATACTGCCTTTGAGAAGATGGAGAACCTAAGAATTCTAATTATTCGGAATACAACATTTTCAACGGCACCTGGTTATCTACCAAATACTTTACGACTGCTTGATTGGAAAGGGTACCCATCCAAGTCTTTTCCACCACGTTTTTATCCCCACAGAATTGTTGATTTCAAGTTACCTCATAGTTCTCTAATGTTGGAAGAGGCATTTCAGGTTTTTGAAGAGAAGGAAAGAGTACAAATTGTGATGCCAAGAGCAGAGATCTCAAATACATTTGACTTTGACTGTGTCAGCAACGAAGGTATTCCACTTTTCTGGGCTCGCCAGAAGTTCCCTGTCATTGCTTTAGCATTGATGTTTGGAAAAGGCAAAGAGAATGAGCAGATACAGGACACCACAATGTTAGATGAATTCTTACCCGGAATTCTCTCAGACAAGTCCCACTTTGTTGGTCTTCACCTGTTCATAGATGACAAAGAAATATGCCGCAAAGATTATCATTATTGCAGTGTTGGGGAGGATCACATGCTATTGTGTGATCTAAGGACTTTGTTCAGTGACCAGGAGTGGCAAGGTCTTGATAATTGTGTTGGAGATGATTGGAAGGCCATTCAGGTTCAATGTGAATCATGGTTGACAATTAGTCATTGGGGAATTTACGTGAACAAACAGAAAACAAACACAAACGATATCCAATTCACCCCTCCTGATTCCAACTACATGCCACCATCAGGTTTGTTTCCAAAAAGAATTCCTCAGATGTCTAAGCAAAGAATAAGACATGCATTAGAAAACATGCATCCAAGACAAATATTTGGCAAGTATTTGCCTCTTTTAGAGTCAGAAGAGACTCCCAGCTTTACAAAGGCGTTGTTGAGATCTTGGAGGAAGGTTAGAGCTGATTTTGGAGGGGAAGTTTCAGCCTCTGCCTTTGGGGCAAGTATAGAGCAAGAACATGAAGAGTCTGTGTGGGATGTGGTACGGGTTGTAGAGTTGATGAAAGAGAATGTGCCAAAACATGTTGCCGACTCATACACTGATGACATACAAGGTGTATACCAATTTACAGAACAGTTCCTGAAGGCACGGGTAGAGTTTATGAAGGAGAAAGGTAATGACAGGTTGGACATTGATATGCCTATTATCCTAGAGGCATGTCATTTTGGTGAAGCTCCTAGTCGTCGCTATTGGGGAAAGTTGCAGATAAAGCATGGAGATCCCAACTTTAAAGCAGTGTTGAGAAAGACAAGCCAACTTGCATGGAGATTTTGGAACAACAAAGAAGTCTTGAAGGAGAGGATGTACATTGTTCTATTGAAATGCCAGCAACCATCTACAAAGGAAGCTTCAACTTCAATCTCTAGCCAAGAGGAATCCTTGGAAGAAGACTGCTATTACTATGATCCTGTGTTGGAAGAATTATTGAGTAGGATACAGGATGATGCTATGAGGTTGAACAAATCTTATGGGACGATGAAGGCATCTATTGTTCAATGTCAGGATCACGAACTGGTTTCTGACAAATATTTGATGGAAACTTTATTTCTCAGAGGACAAGAAAATTTGGCAAATGGAAACTCAGGATTGGGACAGTTGGAGATGGGTTTGTTAGGACTGGGAATGATGGGATCGGGCATGTCGGGATTGGGAAGGTTGGGATTGGGAGCTAATTTCAAAAAGACACCTTATGGGAAGTTAAGGGTGGAGAACAATGCTCAGACTCAGAGGACTTCTGCTCAGAGGACTTCTACTCGGAAGCAGAGTGAGTCAAGGGTGAATCATGATGATTCACAAACAATTCACAAGCAGAGTGAGTTGAGGGACTCTCAGTGCATTACTCAGAATCAGAAGTTGGGTTGGACCAAGACTCTTATGAGGTGGATTCTATGCTGTTTTGCCCCTAAGTGCTATCATAGCTAA	3582	0.4031	MANLSHDATSPDDFFYDVFLSFRGGTRYGFTDHLYNALRRKGIYTFRDTEELKIGAEIRPALLKAIENSRMSMVVLCKDYASSTWCLDELAKIIDCYHANKGKQVLMIFYKVEPSDVWDQKNSYAEAMVEHEKRFGKDSEKVRKWRQALAKVRDLTAEHCEDHEYEPGLIKKIVKDTSAKLPPIPLPIKHVVGVDSRFQEVKPMIDIESHDSVRIIEIYGAGGIGKTTLALDIYNNIRHQFEAASFLANVREKSNKSTKGLEDLQKTLLSEMGEETEVMMGNTFKGANEIKRRLGHKKVLLVLDDVDTIKQLESLVGGGDWFGSGSRIIITSRDTTLLDKHVINDVIIQKYEMKELNDHDSLELFCWHAFNMSEPAENYEGVSNRAVGYAKGLPLALKVIGSNLKGGSLEDWDMELDKYEKVPNAKIQEVLEISYHSLYDLDQKIFLDIACFFKGERWEYVERILKACDFFPSIRVFIVKCLITIDENGCLDMHDLIQVMGREIVRKESSLNVGDRTRLWSHKEVLRVLKENSGSNKIEGIMLDPPSHEEVCDWIDTAFEKMENLRILIIRNTTFSTAPGYLPNTLRLLDWKGYPSKSFPPRFYPHRIVDFKLPHSSLMLEEAFQVFEEKERVQIVMPRAEISNTFDFDCVSNEGIPLFWARQKFPVIALALMFGKGKENEQIQDTTMLDEFLPGILSDKSHFVGLHLFIDDKEICRKDYHYCSVGEDHMLLCDLRTLFSDQEWQGLDNCVGDDWKAIQVQCESWLTISHWGIYVNKQKTNTNDIQFTPPDSNYMPPSGLFPKRIPQMSKQRIRHALENMHPRQIFGKYLPLLESEETPSFTKALLRSWRKVRADFGGEVSASAFGASIEQEHEESVWDVVRVVELMKENVPKHVADSYTDDIQGVYQFTEQFLKARVEFMKEKGNDRLDIDMPIILEACHFGEAPSRRYWGKLQIKHGDPNFKAVLRKTSQLAWRFWNNKEVLKERMYIVLLKCQQPSTKEASTSISSQEESLEEDCYYYDPVLEELLSRIQDDAMRLNKSYGTMKASIVQCQDHELVSDKYLMETLFLRGQENLANGNSGLGQLEMGLLGLGMMGSGMSGLGRLGLGANFKKTPYGKLRVENNAQTQRTSAQRTSTRKQSESRVNHDDSQTIHKQSELRDSQCITQNQKLGWTKTLMRWILCCFAPKCYHS	1193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0103	1193	Gene3D	-	181	349	IPR027417	-
	Ssu2g0103	1193	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	20	628	-	-
	Ssu2g0103	1193	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	646	833	IPR044974	GO:0006952
	Ssu2g0103	1193	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	628	IPR044974	GO:0006952
	Ssu2g0103	1193	Pfam	TIR domain	16	181	IPR000157	GO:0007165
	Ssu2g0103	1193	Gene3D	-	355	439	IPR042197	-
	Ssu2g0103	1193	Pfam	NB-ARC domain	211	420	IPR002182	GO:0043531
	Ssu2g0103	1193	PRINTS	Disease resistance protein signature	215	230	-	-
	Ssu2g0103	1193	PRINTS	Disease resistance protein signature	390	404	-	-
	Ssu2g0103	1193	PRINTS	Disease resistance protein signature	293	307	-	-
	Ssu2g0103	1193	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	646	833	-	-
	Ssu2g0103	1193	MobiDBLite	consensus disorder prediction	1124	1154	-	-
	Ssu2g0103	1193	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	155	IPR035897	-
	Ssu2g0103	1193	SMART	till_3	15	155	IPR000157	GO:0007165
	Ssu2g0103	1193	MobiDBLite	consensus disorder prediction	1124	1140	-	-
	Ssu2g0103	1193	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	183	449	IPR027417	-
	Ssu2g0103	1193	SUPERFAMILY	"Winged helix" DNA-binding domain	426	530	IPR036390	-
	Ssu2g0103	1193	ProSiteProfiles	TIR domain profile.	14	181	IPR000157	GO:0007165
	Ssu2g0103	1193	Gene3D	-	15	180	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0103	Ssu-Chr2	6876697	6885217	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0103	16	616	WRKY Transcription Factor Family	AT4G12020	31.240	2.76e-62	232

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0103	-		-	gmx:100800797	1044.26