Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0098 ATGTCGGGGAGTTTTTCTTCTGTTGTTGTATCTCCTCCTTTGATTAGGCATGATGTGTTCCTCAACTTCCGAGGGGAGGACACCCGTGACAACTTCGTCAGTCACCTTCGTGCAGAACTACGCAGGAAAAAGATTGAAGCATATATAGATGAGAGACTAGGCAGAGGCGAAGAGATATCATCTGCGCTGCACAAAGCAATAGAAGAATCAAAGATTTATGTCCTCATTTTCTCCGAACACTATGCATCTTCCACATGGTGTTTGAATGAACTCACGAAGATACTGGAATGCAAGAGGAAATATAAAAGGGATGTGATACCTGTTTTCTACAAGGTGGATCCATCAATTGTTAGGAAGCAGGGGGACAAATATGCAGAAGCATTTGATGGGCATGAACAGCAATTTAAGGACAACATTGACAAAGTGTACGCATGGAGGGCTTCTCTAACTAAAGCAGCTGGAATCTCGGGCTGGGATTCACGAGCAATCAGACCAGAATACACCCTTGTCACAGAAATTGtgaatgatattttgagaaaattgagtctTTCTTCCGTAAGTGATCATCAAGGAATTATTGGAATTGACAACCATATTGCACGAATCCAGTCCTTGTTGCACCTTGATTCACCGGCTATTCGGTTCATAGGAATTTGGGGCATGGGAGGAATAGGAAAAACTACAATTGCTAGGCAAATATATCACAAATTGGTATTGCAATTTGGTTCCAGCAGCCTCCTTTTAAACGGTcaagaagaaatagaaagacATGGAATACACCGTATAAGAGAAAAATGTTTATCAGAGCTTCTACAGGGAGACCACACATTCTCTGGATCAAGTTTTTCATATGAAAGGCTCAAACGGACAAAGGTTCTCCTCATTCTTGATGATGTGAACAATTGGGatcaactaaaatatttaattggaGACATTGGTAATTTTGGCCAGGGCAGTAGAATCATTGTGACCAGTAGAGACAAGCAAGTTCTTAAGAATGCTAAAGCTGATGAAATATATGAAGTTGAGGTGATGAATTTTGAAGATTCTCTAAAACTGTTCAGTTTAAGCGCTTTTAAAGAAAACCGTCCAATAGAAACTTATATGGACTTGTCAGTAAAGGTACTGAATTATGCTAGAGGGATTCCATTAGCCCTCAATGCTTTGGGCTCATTGCTTTATGGTAGAACAAGGGAAGCATGGGAAAGCGAATTGAAAAAGTTGGAAATGCTGGAAAAGCGTCCCGATCctaaaattttcaatgtattaaaattaagttacgATGGGCTTGACGAGGAGCAGAAGGATATATTTCTTGACATAGCTTGCTTCCATAGAGGACAAGAGGAGATTGTTGTAGCACAAACACTAGATAGCTGTGGTTTCTCTGCTAACATTGGGATGGATGTTCTCAAAGATAGGTGCCTAATATCTGTTTTGGAAGGTAGAATTGTGATGCATGATCTAATACAAGAAATGGGACAAGAAATTGTTCGACAACAATGTGTCAATAATCCTGGAAAACGCAGTCGATTGTGGAATGTTGAGGACATCTAcactgttttaaaaaagaacaagGGGAAAGATGCAATACAGTGTATATTGCTCGacatatgtaaaataaaaaatgttcaactaCATGCTAAAACTTTCGAAAAGATGGACAATTTGAGGATGCTCCAGTTCTACAAGTCTTCTGGCTATCGGAATGACTCAAATGTGTTTCTTGCATCACCTCTAGAAAGTCTTCCGGACAGTTTAAAAATTCTTCGTTGGGATGCCTTCCCTCAAAGATCTTTGCCGCCGAACTTTTGCCCAGAAAATCTAGTGAGACTCGAAATGCGACATTGCCGTATTCTTGAACAACTGTGGCAAGAAGATCAGCATTTACCGAGTTTGAAAAGGCTCGATCTGAGTTATTCTTGGAAACTAACTCGAATACCGGACCTCTCTCAGTCACCAAATATTGAAGAAATATTTCTCAGTGATTGTGTAAGGTTGTGTAAGGTTTACTCCTCGGGTTTCCTCAGCAAGCTCAATAGTTTAAGGTTAAATGGTTGTGTTAAGCTTAGGAGTCTATGTATTCCGAGCAATATTCTATCCAGATCATCAGGATCAATTGTTCTTCACAATTGTCGCATTCTCGAAACATTTTCAATCTGTAATAGAACCGATGTGGTTCAATTATATGGTTGCTCACATCGTAGTATACCGCCTTTACCTGAAGAAAAAAGGAGTGgcagatataaatataaagaagcaGCAGGAACTAGTCTTTCACAACACgataaattaagatttgaatttttgcAGGGAGATGCATCTACATTTAGTGTCgatataattgaagaaaaagtgtGTCCAggtttagagaaaaaagaagaaaataagaagagaaagtgTCTAGatgtagagaaaaaagaaaaaaaagaggtgtGTCCAGATTTAGAGAAAAAatctaaagaagaaaagaagaagaaaatgtgtccagatttagagaaaaaagaaaaagaagagaaggtgTGTCCagatttagagaaaaaagaacaagaagaaaagaagagtgTGTGTCCagatttagagaaaaaagaaaaagaagagcaGGTATGTCCAgatatagagaagaaaaaagaccaaaaaaggAGGCGCATCCAGACGAATTCGTTTTATGTTGTATGCCGTATAGCGAAGACTTCTACACTAGAGTGCTGA 2712 0.3418 MSGSFSSVVVSPPLIRHDVFLNFRGEDTRDNFVSHLRAELRRKKIEAYIDERLGRGEEISSALHKAIEESKIYVLIFSEHYASSTWCLNELTKILECKRKYKRDVIPVFYKVDPSIVRKQGDKYAEAFDGHEQQFKDNIDKVYAWRASLTKAAGISGWDSRAIRPEYTLVTEIVNDILRKLSLSSVSDHQGIIGIDNHIARIQSLLHLDSPAIRFIGIWGMGGIGKTTIARQIYHKLVLQFGSSSLLLNGQEEIERHGIHRIREKCLSELLQGDHTFSGSSFSYERLKRTKVLLILDDVNNWDQLKYLIGDIGNFGQGSRIIVTSRDKQVLKNAKADEIYEVEVMNFEDSLKLFSLSAFKENRPIETYMDLSVKVLNYARGIPLALNALGSLLYGRTREAWESELKKLEMLEKRPDPKIFNVLKLSYDGLDEEQKDIFLDIACFHRGQEEIVVAQTLDSCGFSANIGMDVLKDRCLISVLEGRIVMHDLIQEMGQEIVRQQCVNNPGKRSRLWNVEDIYTVLKKNKGKDAIQCILLDICKIKNVQLHAKTFEKMDNLRMLQFYKSSGYRNDSNVFLASPLESLPDSLKILRWDAFPQRSLPPNFCPENLVRLEMRHCRILEQLWQEDQHLPSLKRLDLSYSWKLTRIPDLSQSPNIEEIFLSDCVRLCKVYSSGFLSKLNSLRLNGCVKLRSLCIPSNILSRSSGSIVLHNCRILETFSICNRTDVVQLYGCSHRSIPPLPEEKRSGRYKYKEAAGTSLSQHDKLRFEFLQGDASTFSVDIIEEKVCPGLEKKEENKKRKCLDVEKKEKKEVCPDLEKKSKEEKKKKMCPDLEKKEKEEKVCPDLEKKEQEEKKSVCPDLEKKEKEEQVCPDIEKKKDQKRRRIQTNSFYVVCRIAKTSTLEC 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0098 903 Pfam NB-ARC domain 197 428 IPR002182 GO:0043531
Ssu2g0098 903 Gene3D - 183 344 IPR027417 -
Ssu2g0098 903 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Ssu2g0098 903 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 720 - -
Ssu2g0098 903 Gene3D - 345 431 IPR042197 -
Ssu2g0098 903 PRINTS Disease resistance protein signature 286 300 - -
Ssu2g0098 903 PRINTS Disease resistance protein signature 379 393 - -
Ssu2g0098 903 PRINTS Disease resistance protein signature 628 644 - -
Ssu2g0098 903 PRINTS Disease resistance protein signature 215 230 - -
Ssu2g0098 903 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Ssu2g0098 903 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 720 IPR044974 GO:0006952
Ssu2g0098 903 SMART till_3 16 155 IPR000157 GO:0007165
Ssu2g0098 903 Gene3D - 15 182 IPR035897 -
Ssu2g0098 903 SUPERFAMILY L domain-like 532 738 - -
Ssu2g0098 903 MobiDBLite consensus disorder prediction 824 868 - -
Ssu2g0098 903 Coils Coil 790 810 - -
Ssu2g0098 903 Pfam TIR domain 17 190 IPR000157 GO:0007165
Ssu2g0098 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 441 IPR027417 -
Ssu2g0098 903 Gene3D Ribonuclease Inhibitor 513 760 IPR032675 -
Ssu2g0098 903 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 158 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0098 Ssu-Chr2 6804766 6817765 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0098 17 718 WRKY Transcription Factor Family AT4G12020 34.353 7.89e-98 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0098 - - gmx:100814075 1017.3