Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0089 ATGGCAAACCCGAATTACGATGATTTCTTCTATGATGTTTTTCTGAGTTTTAGAGGTGCGACCCGTCATGGGTTCACAAATGATCTCTACAATGCTTTGCGCCAAAAGGGAATCTACACTTTCAGAGACAATAACGAGCTTAGGATTGGGGCAGAAATCAGACCTGCCCTTCTTAAGGCAATCGAAAATTCCAGAATGTCAATGGTTGTGCTCTGTGAAGACTACGCGTCTTCCACTTGGTGCCTCGACGAACTTGCCAAGATCATTGACTGCTATCATGCTAACAAAGGGAAACAAGATCTGGTGATATTTTACAAAGTCGAACCGTCTGATGTGTGGGACCAGAAAAATTCGTATGCAAAAGCCATGGCTAAGCATGAAGAGAGATTTGGAAAAGACTCGGAGAGGGTGAAGAAATGGAGGGAAGCTCTATCCAAAGTGCGCGACCTGACCCCAGAACACTGCAAGGACAGTGGGTATGAACCTGGACTTATCCCCAAGATTGTTAAAGATACCTCTGCTAAATTACCTCCAATCCCTTTACCAACTAAACATGTAGTTGGAATTGATTCTCGGTTTCAAGAGGTGAAATCAATGATAGATATCGAGTCTCATGGTACCGTCCGCATCTTAGAAATTTATGGAGCTGGCGGAATTGGCAAAACTACATTTGCCTtgcatatatataacaatatcaGACATCAATTTGAAGCTGCAAGCTTTCTTGCTAATGTCagagaaaaatcaaacaaaagcaCTAAAGGCCTGGAAGATCTCCTAAAGACACTTCTATCTGAGATGGGTGAAGGGACAGAAATTATAGGGGCCGACGAAATCAAACGCAGACTTGGTCATAAAAAGGTTCTCTTGGTTTTGGATGATGTTGATGCGGTAAGACAATTCGAGTCCCTAACTGGAGGAGGTGCTTGGTTTGGTTCTGGCAGTAGGATCATCATAACAACAAGGGTTACAACATTGCTAGATAAGCATGTCACGACAAATGTGatcattgaaaaatatgaaatgaaggTGCTAAATGATCGTGACTCTCTTGAACTCTTTTGTTGGCAAGCCTTTAAAAAGAGTGGACCAGAAGAAAACTTTGAAGATGTTTCTAATCGTGCAGTGCGTTATGCAAAAGGTCTTCCGTTAGCTTTAAAAGTAATAGGCTCCAATCTAAAAGGTGGGAGCCTAGACGCTTGGGATATGGAATTggacaaatatgaaaatattccAAATGCCAAGATTCAAGAAGTGCTTGAAATAAGCTACCATAGTTTAAATGACTTGGACCAGAAAATTTTCTTGGACATTACTTGTTTCTTCAAAGGAGAGACATGGGAATATGTTGAAAGCATACTAAAGGCAAGTGATTTCTTCCCAAGTATACGAGTATTTATTGTGAAATGTCTCATAACTGTTGATGAAAATGGCTGCTTGGATATGCATGATCTAATACAAGTCATGGGTAGAGAGATTGTTAGAAGGGAGTCATCAGAAAATGTTGGTGATCGTACCAGACTTTGGTGTCGTAAGGAAGTTCTTCGAGTACTTAAAGAAAATTCGGGAAGCAATAGAATTGAAGGAATAATGCTTGATCCCCCCAGTCATCAAGAAGTATATGATTGGATAGATACTGCCTTTGAGAAGATGGAGAACCTAAGAATTCTAATTATTCGGAATACAACATTTTCAACGGCACCTAGCTATCTACCAAACACTTTACGACTGCTTGATTGGAAAGGGTACCCATCCAAGTCTTTTCCACCGCATTTTTATCCCCACAGAATTGTTGATTTCAAGTTACCTCATAGTTCTCTAATGTTGGAAAAGCCATTTCAGGTTTgtgaagaaaaggaaagaatacAATTTGTGATGCCAAAACAAGACATTCCAAATTGGTTTGATCGTGACGGCAAGAATGATGTTCCGCTCATGTGGGCTCGCCATAAATTCCCTATTATTGCTTTAGCATTTGTGATGGGAAAGAGTGATGTGAAAAGTTTTGCTTCCCTTCGGGAGAATTGTGCTTGCCCCAAGCCCAGTGTTGGGGAGGAGCACGTGTTGTTGTGTGATTTGCGGGTTTTGTTCAGTGACGAAGAGTGGCAGGGTCTTGATGCATATTTTATTGGAGGTGAATGGAAGGCCGTTCAGGTTCAATGTAACTCATACTTGCCATTGAGACGTTGGGGAGTATTTGTGTACAAGCAGAAAACAAACACTGGTGATATCCGATTTAGCACTCCCCATCCCAACTCCTCAAGAGACTACATCCCATTCCCATCATCAGTTTTGGTTGAGCAGAGAATAAGGCGTTTCTATGCAAATATGAATCCGAGAGAATTTTGGGGGTCGTATTTGCCTTTTGTTGATGAGCCGTTTGCCAAAGAAATTTGTAAGAAGTTCATGTTCAAGTCGCCAAGGGGCACCCTGGCCAACGATGCTAAAGGGAAAGATTTAGCCTGTGATTATGGGGCAAGTTTAATGCAAGATCACGAAGAATCTACCTGGGATGTAGTTCGGTTGATAGAGACTATGAAGGAGAATACGCCAAAGCATATTCTTGATTCATACCCTGATGACGCGCGACATTCATATAAAGTGTACGAGGAATTCTTAAGGACTCAGCCAGAAGGGAGCTTTGTTCTTGATATACCTATTATCCTAGAGGATGGTGAAGATTCAAGTCGTCGCTATTGGGGAAAATTGCAGATAAAACATGGAGAACCAGCGTTCTACGCGGTGTGGAGGAAGGGATGTCGAGTTTCGTGGAGAGTACCAATGTCAAACAACATAGCCCTGGACGCAGGGAAACGGGTAAACATTGTTCTATTGAAATGCTGGTGTCCGTCAAAAGAGGGAGCTTCAACCTCTGGCCGGGGGGAGGAAGAATGCCACGAGTACGATCCTATGTTGGATGAATTGATGAGTAGGATTGAGGAAGACGCTATGAGTATGAGGTTGAACAAATCTTATGATGGGAAATTGAAGGCGTCTATTGTTTCGGTTCCGGGGCATGAATTTGTTTCTTCCAAATATTTGGGGAAGCAGAATTCTTTGGGAGGAAAGAAGTTTTGGAAGAAGGGAACTATTCATGGGCAATGA 3105 0.409 MANPNYDDFFYDVFLSFRGATRHGFTNDLYNALRQKGIYTFRDNNELRIGAEIRPALLKAIENSRMSMVVLCEDYASSTWCLDELAKIIDCYHANKGKQDLVIFYKVEPSDVWDQKNSYAKAMAKHEERFGKDSERVKKWREALSKVRDLTPEHCKDSGYEPGLIPKIVKDTSAKLPPIPLPTKHVVGIDSRFQEVKSMIDIESHGTVRILEIYGAGGIGKTTFALHIYNNIRHQFEAASFLANVREKSNKSTKGLEDLLKTLLSEMGEGTEIIGADEIKRRLGHKKVLLVLDDVDAVRQFESLTGGGAWFGSGSRIIITTRVTTLLDKHVTTNVIIEKYEMKVLNDRDSLELFCWQAFKKSGPEENFEDVSNRAVRYAKGLPLALKVIGSNLKGGSLDAWDMELDKYENIPNAKIQEVLEISYHSLNDLDQKIFLDITCFFKGETWEYVESILKASDFFPSIRVFIVKCLITVDENGCLDMHDLIQVMGREIVRRESSENVGDRTRLWCRKEVLRVLKENSGSNRIEGIMLDPPSHQEVYDWIDTAFEKMENLRILIIRNTTFSTAPSYLPNTLRLLDWKGYPSKSFPPHFYPHRIVDFKLPHSSLMLEKPFQVCEEKERIQFVMPKQDIPNWFDRDGKNDVPLMWARHKFPIIALAFVMGKSDVKSFASLRENCACPKPSVGEEHVLLCDLRVLFSDEEWQGLDAYFIGGEWKAVQVQCNSYLPLRRWGVFVYKQKTNTGDIRFSTPHPNSSRDYIPFPSSVLVEQRIRRFYANMNPREFWGSYLPFVDEPFAKEICKKFMFKSPRGTLANDAKGKDLACDYGASLMQDHEESTWDVVRLIETMKENTPKHILDSYPDDARHSYKVYEEFLRTQPEGSFVLDIPIILEDGEDSSRRYWGKLQIKHGEPAFYAVWRKGCRVSWRVPMSNNIALDAGKRVNIVLLKCWCPSKEGASTSGRGEEECHEYDPMLDELMSRIEEDAMSMRLNKSYDGKLKASIVSVPGHEFVSSKYLGKQNSLGGKKFWKKGTIHGQ 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0089 1034 Pfam TIR domain 11 176 IPR000157 GO:0007165
Ssu2g0089 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 438 IPR027417 -
Ssu2g0089 1034 Pfam NB-ARC domain 208 404 IPR002182 GO:0043531
Ssu2g0089 1034 PRINTS Disease resistance protein signature 210 225 - -
Ssu2g0089 1034 PRINTS Disease resistance protein signature 282 296 - -
Ssu2g0089 1034 PRINTS Disease resistance protein signature 379 393 - -
Ssu2g0089 1034 Gene3D - 176 339 IPR027417 -
Ssu2g0089 1034 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Ssu2g0089 1034 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 618 - -
Ssu2g0089 1034 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 682 793 - -
Ssu2g0089 1034 CDD AAA 187 322 - -
Ssu2g0089 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 618 IPR044974 GO:0006952
Ssu2g0089 1034 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 682 793 IPR044974 GO:0006952
Ssu2g0089 1034 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 150 IPR035897 -
Ssu2g0089 1034 Gene3D - 344 428 IPR042197 -
Ssu2g0089 1034 SUPERFAMILY "Winged helix" DNA-binding domain 415 519 IPR036390 -
Ssu2g0089 1034 SMART till_3 10 150 IPR000157 GO:0007165
Ssu2g0089 1034 Gene3D - 10 175 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0089 Ssu-Chr2 6374174 6382303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0089 187 607 WRKY Transcription Factor Family AT5G45050 34.292 1.86e-58 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0089 - - gmx:100800797 978.008