Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0087 ATGGCAAATTTGAGTCATGATGCAACATCCCCGGATGATTTTTTCTATGATGTTTTTCTGAGCTTCAGAGGTGGGACCCGTTACGGGTTCACAGATCATCTCTACAATGCTTTGCGCCGAAAGGGAATCTACACTTTCAGAGATACTGAGGAGCTTAAGATTGGGGCGGAAATCAGACCCGCTCTTCTGAAGGCAATCGAAAATTCTAGAATGTCAATGGTTGTGCTGTGCAAAGACTATGCATCTTCCACTTGGTGCCTTGACGAACTTGCCAAGATCATTGACTGCTATCATGCTAACAAAGGGAAACAGGTTCTGATGATATTTTACAAAGTGGAACCTTCTGACGTGTGGGACCAGAAAAATTCGTACGCAGAAGCCATGGTTGAGCATGAAAAGAGATTCGGAAAAGACTCGGAGAAGGTGAGAAAATGGAGGCAAGCTTTGGCAAAAGTGCGCGACCTGACCGCAGAACATTGCGAGGACCATGAGTATGAACCTGGACATATCAAGAAGATTGTTAAAGACACCTCCGCTAAATTACCTCCAATTCCTTTACCAATTAAACATGTAGTTGGAGTTGATTCGCGGTTTCAAGAGGTGAAACCAATGATAGATATTGAGTCTCATGATTCCGTCCGCATCATAGAAATTTATGGAGCTGGTGGAATTGGCAAAACTACATTGGCCTTggatatatataacaatatcaGACATCAATTTGAGGCTGCAAGTTTTCTTGCTAATGTCagagaaaaatcaaacaaaagcaCTAAAGGCCTGGAAGATCTCCAAAAGACACTTCTATCTGAGATGGGTGAAGAGACAGAAGTCATGATGGGCAATACTTTTAAAGGGGCCAATGAAATCAAACGCAGACTTGGTCATAAAAAGGTTCTTTTGGTTTTGGATGATGTTGATACAATAAAACAATTGGAGTCCTTAGTTGGAGGAGGTGATTGGTTTGGTTCCGGTAGTAGGATCATTATAACATCAAGGGATACAACATTGCTAGATAAGCATGTCATTAATGATGTtatcattcaaaaatatgaaatgaaggAGCTAAATGATCATGACTCTCTTGAACTCTTTTGTTGGCATGCCTTTAATATGAGCGAACCTGCAGAAAATTATGAAGGTGTTTCTAATCGTGCAGTGGGTTATGCAAAAGGTCTTCCATTAGCTTTAAAAGTAATAGGCTCCAATCTAAAGGGTGGGAGCCTAGAGGATTGGGATATGGAATTGGACAAATATGAAAAGGTTCCAAATGCCAAGATTCAAGAAGTACTTGAAATAAGCTACCATAGCTTATATGACTTGGACCAGAAAATTTTCTTGGACATTGCTTGTTTCTTCAAAGGAGAGAGATGGGAATACGTTGAAAGGATACTAAAGGCATGTGATTTCTTCCCAAGTATTCGAGTATTTATTGTGAAATGTCTCATAACTATTGATGAAAACGGCTGCTTGGATATGCATGACCTAATACAAGTCATGGGTAGAGAGATTGTTAGAAAGGAGTCATCATTAAATGTTGGGGATCATACCAGATTATGGTCTCATAAGGAAGTTCTTCGAGTACTTAAGGAAAACTCAGGAAGCAATAAAATTGAAGGAATAATGCTTGATCCTCCCAGTCATGAAGAGGTATGTGATTGGATAGATACTGCCTTTGAGAAGATGGAGAACCTAAGAATTCTAATTATTCGGAATACAACATTTTCAACGGCACCTGGTTATCTACCAAATACTTTACGACTGCTTGATTGGAAAGGGTACCCATCCAAGTCTTTTCCACCACGTTTTTATCCCCACAGAATTGTTGATTTCAAGTTACCTCATAGTTCTCTAATGTTGGAAGAGGCATTTCAGGTTTTTGAAGAGAAGGAAAGAGTACAAATTGTGATGCCAAGAGCAGAGATCTCAAATACATTTGACTTTGACTGTGTCAGCAACGAAGGTATTCCACTTTTCTGGGCTCGCCAGAAGTTCCCTGTCATTGCTTTAGCATTGATGTTTGGAAAAGGCAAAGAGAATGAGCAGATACAGGACACCACAATGTTAGATGAATTCTTACCCGGAATTCTCTCAGACAAGTCCCACTTTGTTGGTCTCCACCTGTTCATAGATGACAAAGAAATATGCCGCAAAGATTATCATTATTGCAGTGTTGGGGAGGATCACATGCTATTGTGTGATCTAAGGACTTTGTTCAGTGACCAGGAGTGGCAAGGTCTTGATAATTGTGTTGGAGATGATTGGAAGGCCATTCAGGTTCAATGTGAATCATGGTTGACAATTAGTCATTGGGGAATTTACGTGAACAAACAGAAAACAAACACAAACGATATCCAATTCACCCCTCCTGATTCCAACTACATGCCACCATCAGGTTTGTTTCCAAAAAGAATTCCTCAGATGTCTAAGCAAAGAATAAGACATGCATTAGAAAACATGCATCCAAGACAAATATTTGGCAAGTATTTGCCTCTTTTAGAGTCAGAAGAGACTCCCAGCTTTACAAAGGCGTTGTTGAGATCTTGGAGGAAGGTTAGAGCTGATTTTGGAGGGGAAGTTTCAGCCTCTGCCTTTGGGCAAGTATAG 2607 0.3951 MANLSHDATSPDDFFYDVFLSFRGGTRYGFTDHLYNALRRKGIYTFRDTEELKIGAEIRPALLKAIENSRMSMVVLCKDYASSTWCLDELAKIIDCYHANKGKQVLMIFYKVEPSDVWDQKNSYAEAMVEHEKRFGKDSEKVRKWRQALAKVRDLTAEHCEDHEYEPGHIKKIVKDTSAKLPPIPLPIKHVVGVDSRFQEVKPMIDIESHDSVRIIEIYGAGGIGKTTLALDIYNNIRHQFEAASFLANVREKSNKSTKGLEDLQKTLLSEMGEETEVMMGNTFKGANEIKRRLGHKKVLLVLDDVDTIKQLESLVGGGDWFGSGSRIIITSRDTTLLDKHVINDVIIQKYEMKELNDHDSLELFCWHAFNMSEPAENYEGVSNRAVGYAKGLPLALKVIGSNLKGGSLEDWDMELDKYEKVPNAKIQEVLEISYHSLYDLDQKIFLDIACFFKGERWEYVERILKACDFFPSIRVFIVKCLITIDENGCLDMHDLIQVMGREIVRKESSLNVGDHTRLWSHKEVLRVLKENSGSNKIEGIMLDPPSHEEVCDWIDTAFEKMENLRILIIRNTTFSTAPGYLPNTLRLLDWKGYPSKSFPPRFYPHRIVDFKLPHSSLMLEEAFQVFEEKERVQIVMPRAEISNTFDFDCVSNEGIPLFWARQKFPVIALALMFGKGKENEQIQDTTMLDEFLPGILSDKSHFVGLHLFIDDKEICRKDYHYCSVGEDHMLLCDLRTLFSDQEWQGLDNCVGDDWKAIQVQCESWLTISHWGIYVNKQKTNTNDIQFTPPDSNYMPPSGLFPKRIPQMSKQRIRHALENMHPRQIFGKYLPLLESEETPSFTKALLRSWRKVRADFGGEVSASAFGQV 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0087 868 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 155 IPR035897 -
Ssu2g0087 868 Gene3D - 15 180 IPR035897 -
Ssu2g0087 868 SUPERFAMILY "Winged helix" DNA-binding domain 426 530 IPR036390 -
Ssu2g0087 868 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 645 821 IPR044974 GO:0006952
Ssu2g0087 868 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 628 IPR044974 GO:0006952
Ssu2g0087 868 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 449 IPR027417 -
Ssu2g0087 868 Gene3D - 181 349 IPR027417 -
Ssu2g0087 868 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 645 821 - -
Ssu2g0087 868 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 628 - -
Ssu2g0087 868 SMART till_3 15 155 IPR000157 GO:0007165
Ssu2g0087 868 PRINTS Disease resistance protein signature 390 404 - -
Ssu2g0087 868 PRINTS Disease resistance protein signature 215 230 - -
Ssu2g0087 868 PRINTS Disease resistance protein signature 293 307 - -
Ssu2g0087 868 Pfam TIR domain 16 181 IPR000157 GO:0007165
Ssu2g0087 868 Gene3D - 355 439 IPR042197 -
Ssu2g0087 868 ProSiteProfiles TIR domain profile. 14 181 IPR000157 GO:0007165
Ssu2g0087 868 Pfam NB-ARC domain 211 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0087 Ssu-Chr2 6334047 6341616 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0087 16 616 WRKY Transcription Factor Family AT4G12020 30.918 3.82e-61 224