Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0086 ATGGCAAATATTAACGAAGATGCAACACCCTCAGATTTTATGTATGATGTTTTTCTGAGTTTTGCCGAAGGGAAAGGGTACCCATTTATCGATTATCTCCACCAAGCTTTGCTCGATGATGGAATCAACACCGTCAAATATGATGAAATCACACGCTCTCTTCTCGAGACAATAGAGAAGTCCAGAATGTCAATAATTGTGCTATGCGAAAACTATGCACGTTCCACTCTGTGCCTTGATTTACTAGTCAAGATCATCGAGTGTTATGATGATGCCAAAGGGAACCGCGTTTTGCCAATTTTCTACAAAGTGGAACCGTCAGATGTTTGGGATCAGAAAAATTCTTTTGCAACAATCATCAGTGAACACGAAGAGAGATTTGGACAAGACTCGGACAAGGTCAAAGCATGGAGGTCAGCTTTGTCTAGAATACGCCACCTAGGCGGAGAACATTGCATGGACTATAaGTATGAATCTGGCCTTATCAAGGAGATTGTTAAAGAAACCTATGCTAAGTTACCTCCGCTTCCTGTGCTTTTAGAAATTAAGCACCCAGTTGGACTGGATTCTCGCTGTGAACAGATCAGGCTTCAGTTTGAAGCTGGAAGTTTTCTTGCTGATGTAAGTGAAAAATCAAGCAATAGCATTGATGGCTTGAAAAATCTCCAAAAGACACTTCTATATGAGACTGGTGAGAAGACACAAACCATGGAAGACAGCACATTTGAAGGAAGCTCTCAAATAAAATGCGAGCTTAGCCATAGAAAGGTTCTTCTGGTTCTAGATGATGTTGACACCATAGAACAGTTGGAATATCTGGCCGATGGATGTGATTGGTTTGGCTCTGGTAGCAAaatcataataacaacaaaaaatgcaacTTTGCTAGATGAGTACCAGGTTGgagttaagaaatataaaatggaGGAGTTGAATTCTCATGAATCTCTCCAACTCTTCTGTTGGTATGCCTTTAATATGAACAAACCTGTAGAGCAATATGCAGATATTGCTAATCGTGTGGTGAGTTATGCAGAGGGAGTTCCATTAGCTTTAATAGTGTTAGGCTCCCATTTGAAGGGTCTAAGTGTAGAGGAATGGGAAATGGCATTGAAGAAATATAGGATGGTtccaaattcattttcttttctggtAGACTCCTTTTGA 1167 0.3847 MANINEDATPSDFMYDVFLSFAEGKGYPFIDYLHQALLDDGINTVKYDEITRSLLETIEKSRMSIIVLCENYARSTLCLDLLVKIIECYDDAKGNRVLPIFYKVEPSDVWDQKNSFATIISEHEERFGQDSDKVKAWRSALSRIRHLGGEHCMDYKYESGLIKEIVKETYAKLPPLPVLLEIKHPVGLDSRCEQIRLQFEAGSFLADVSEKSSNSIDGLKNLQKTLLYETGEKTQTMEDSTFEGSSQIKCELSHRKVLLVLDDVDTIEQLEYLADGCDWFGSGSKIIITTKNATLLDEYQVGVKKYKMEELNSHESLQLFCWYAFNMNKPVEQYADIANRVVSYAEGVPLALIVLGSHLKGLSVEEWEMALKKYRMVPNSFSFLVDSF 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0086 388 Gene3D - 10 176 IPR035897 -
Ssu2g0086 388 ProSiteProfiles TIR domain profile. 13 173 IPR000157 GO:0007165
Ssu2g0086 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 193 379 IPR044974 GO:0006952
Ssu2g0086 388 Pfam TIR domain 15 173 IPR000157 GO:0007165
Ssu2g0086 388 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 147 IPR035897 -
Ssu2g0086 388 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 193 - -
Ssu2g0086 388 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 193 379 - -
Ssu2g0086 388 SMART till_3 14 147 IPR000157 GO:0007165
Ssu2g0086 388 Pfam NB-ARC domain 222 373 IPR002182 GO:0043531
Ssu2g0086 388 Gene3D - 310 383 IPR042197 -
Ssu2g0086 388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 193 IPR044974 GO:0006952
Ssu2g0086 388 PRINTS Disease resistance protein signature 345 359 - -
Ssu2g0086 388 PRINTS Disease resistance protein signature 251 265 - -
Ssu2g0086 388 Gene3D - 190 308 IPR027417 -
Ssu2g0086 388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 378 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0086 Ssu-Chr2 6319378 6321044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0086 193 378 WRKY Transcription Factor Family AT5G45050 30.366 1.11e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0086 - - gmx:100800797 391.349