Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0074 ATGAGTGTTGTGTATAGTCATGGTGTGAAGTACTCCGAAGGGGAGACAAGGATGAACCTAGAAGTGGATCCAAACATTGGTCAACATTGTCACCAACACAATTCTGGACTAATGCGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGtggacgacgacgacgacgacgacgacaacgacaataacaacaacaacaacattggTTGTGTCAATGGTGAAGTTTTCAGAAGTGAGAATCAGCAGCAGCAGCATTATGCTTCCTCCACATGTTCTGAAATGGAGACCATGTTTGCCAAGTTGATTTCTTCCACCAATTCTGAGCCTTTGCAAGTGAAGCAAGAAGCAGGGAACTCTGTTTCACATGCACCACAGCAACACAGTGGTTACTCCTATGGGTCTTCACCTCAGATAATGTACCACACTCAGCAAATTCAAGGCTTGCCAATGCCAAATGGGTCTTTAGGGGCTGTAGGGAATGCTTTTGATGGCTCATTCAGGGCAGTGAATTCCCTGGCTTCGCAGAATTCCACACAAACCAAAATGGGTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCTGGGTTTTTCTCCAATTATTCAGTTGATAATGCATTGAGAGATGTGGCAAGTTTTAGGGCCTGTGATGTCTCAAATGGACAAGCTATTACATCTACTAGTGGGTTGCATGGTACTTTGAATTTCTCATCTAGGCCATCCTCTTGCTCCACCCGGATGCCACAGATTGCTGAAAATGGAAATGAAGATGTGGAAGCAAACTGTGTTGAAACTAGAAACCTGAGAAATGACAATGTCAACACTAAATGTTACCTGCCTAGTTTCACCAGTGACTTCTGGGATGGTTCTGCATACAGTGCACCCAAAACAGCTAGTGGCAGTGGTGAAATCACGTTTTCCACTTCAAATGCTTTGGATATTCAGGATGCAGATTTTGGATATCAAAAAGTTGGTTTGACCCACCATTTGAGTTTGCCTGGCTCTTCTTCTGGGATGGCTACCCTGGGGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAGAGAGGTTTTGCTACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACACGAATTAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTGCAGAAAGAAGTTAAGATGCTCACAGATACTAGGGCAAAGTGCACTTGTACAAGGAATCAGAAGCAATATTCTAGACCTTGTGCCTGA 1338 0.42 MSVVYSHGVKYSEGETRMNLEVDPNIGQHCHQHNSGLMRYRSAPSSLLTSLVDDDDDDDDNDNNNNNNIGCVNGEVFRSENQQQQHYASSTCSEMETMFAKLISSTNSEPLQVKQEAGNSVSHAPQQHSGYSYGSSPQIMYHTQQIQGLPMPNGSLGAVGNAFDGSFRAVNSLASQNSTQTKMGASTNCSNLIRQKSSPAGFFSNYSVDNALRDVASFRACDVSNGQAITSTSGLHGTLNFSSRPSSCSTRMPQIAENGNEDVEANCVETRNLRNDNVNTKCYLPSFTSDFWDGSAYSAPKTASGSGEITFSTSNALDIQDADFGYQKVGLTHHLSLPGSSSGMATLGKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKEVKMLTDTRAKCTCTRNQKQYSRPCA 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0074 445 MobiDBLite consensus disorder prediction 111 136 - -
Ssu2g0074 445 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 437 - -
Ssu2g0074 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 367 417 IPR011598 GO:0046983
Ssu2g0074 445 SMART finulus 373 423 IPR011598 GO:0046983
Ssu2g0074 445 Gene3D - 369 440 IPR036638 GO:0046983
Ssu2g0074 445 MobiDBLite consensus disorder prediction 49 70 - -
Ssu2g0074 445 Pfam Helix-loop-helix DNA-binding domain 373 418 IPR011598 GO:0046983
Ssu2g0074 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 370 430 IPR036638 GO:0046983
Ssu2g0074 445 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0074 Ssu-Chr2 6108075 6111732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0074 35 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.085 5.17e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu2g0074 HLH 1.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0074 - - gmx:100795896 727.628