Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0070 ATGGCTCAGAAAGCAGAGAAAAACGAAACCGAGTTCAAGGTCCCCGAACCCATCACCCcctgcaccaccaccaccacctcgaTTTCCGAACCTTCTAGATTCTTCCCCGCCACGTCATCGCGCTCCCCCAAGCGATCCCTCCCTCCCGACTCCGAAGACCCCGCGAGCGCCGACCAGACGACGCCGTCCGAGCCCAAGCGCGCCGTCAACCGCTGCTCCGGTTGCCGGCGGCGCGTGGGACTCGCCGGAATCCGGTGCCGCTGCGGCGAGCTCTTCTGCGGCGAGCACCGGTACTCCGACCGCCACGACTGCTCCTACGACTACAAGGCCGCCGGGAGGGAAGCCATCGCCAGGGAAAATCCCGTCGTGAAGGCCGCGAAGATCGTCAAGGTCTGA 396 0.6136 MAQKAEKNETEFKVPEPITPCTTTTTSISEPSRFFPATSSRSPKRSLPPDSEDPASADQTTPSEPKRAVNRCSGCRRRVGLAGIRCRCGELFCGEHRYSDRHDCSYDYKAAGREAIARENPVVKAAKIVKV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0070 131 Gene3D - 41 127 IPR035896 -
Ssu2g0070 131 SUPERFAMILY AN1-like Zinc finger 57 125 IPR035896 -
Ssu2g0070 131 PANTHER AN1-LIKE ZINC FINGER PROTEIN 1 56 - -
Ssu2g0070 131 MobiDBLite consensus disorder prediction 1 69 - -
Ssu2g0070 131 MobiDBLite consensus disorder prediction 53 67 - -
Ssu2g0070 131 PANTHER AN1-LIKE ZINC FINGER PROTEIN 39 131 - -
Ssu2g0070 131 ProSiteProfiles Zinc finger AN1-type profile. 66 112 IPR000058 GO:0008270
Ssu2g0070 131 SMART AN1_Zf_4 72 109 IPR000058 GO:0008270
Ssu2g0070 131 Pfam AN1-like Zinc finger 72 109 IPR000058 GO:0008270
Ssu2g0070 131 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 56 - -
Ssu2g0070 131 PANTHER AN1-TYPE ZINC FINGER PROTEIN 39 131 - -
Ssu2g0070 131 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0070 Ssu-Chr2 5957002 5957397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0070 60 131 C2H2 Transcription Factor Family AT3G52800 58.333 1.84e-27 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0070 - - gmx:100794830 210.305