Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0067 ATGGAACACGGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGTTTTATTGGTTCATGGATTGTCAAGAGGCTCCTTGAAGATGGTTACTCTGTGAACACCACAGTGAGACCCGATCCAGtaGAACACAAGAAGGATGTTAGCTTTCTTACCAGCTTACCAGGAGCATCTCAAAGGCTACAAATTTTCAGTGCTGATCTAAGCAATCCAGAAAGCTTCAGTGCAGCCATTGAAGGGTGCGTTGGAGTTTTCCATGTTGCTACCCCAGTGGACTTTGAACTAAAGGAACCGGAGGAAGTAGTGACCAAAAGATCCATTGATGGCACACTAGGCATTTTGAAGGCATGCCTCAATTCCAAGACTGTGAAGAGGGTTGTTTACACCTCTAGTGCCTCTGCATTGAATAGCAATGGCAAAGGAGAAATGGTGGATGAAAGCTCTTGGAGCGATGTGGATGATCTTAGAGCTTCAAAGCCACATGGTTGGTCATATGCGGTTTCAAAGACATTGACAGAAAAGTCAGTACTTGAATTTGGAGAACAGAATGGATTGGATGTTGTCACACTACTTCCAACTAGCGTTTTTGGACCCTTCATTTGTCCACAGATTCCTATCTCAattataaatatattaaaggaAATTTATGCAGGAGAAAAAAGTGCCTTTGGTTTCATGCTTCAGACACCAATGGTGCATGTGGATGACGTGGCTAGAGCACATATATTTTTGCTGGAACATCCTAATCCGAAAGGGAGGTATAATTGTTCACAATGTTTGGTAACTTTTGAAAGGATCTCTGAACTTGTTTCTGCCAAATACCCTGAATTTCAACTAGAGACACAAACTGAAGGTATGAAGGTCCCAGATTTATCGTCAAAGAAGCTGACAGATTCTGGATTTGTGTTCAAGTATGGACTTGAGGAAATGCTTGATGATGCAATCCAGTGCTGCAAAGAAAAAGGGTTACCTGTGAGCCAAATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGTTTTATTGGTTCATGGATTATCAAGAAGCTCCTTCAAGATGGTTACTCTGTTAACACCACTGTGAGAACCGATCCAGaacACAAGAAGGATGTTAGCTTTCTTACCAGCTTACCAGGAGCATCACAAAGGCTACAAATTTTCAGTGCTGATCTCAGCAATCCAGAAAGTTTCAGTGCAGCCATTGAAGGGTGCATTGGAGTTTTCCATGTTGCTACCCCAATTGACTTTGAACTAAAGGAACCGGAGGAAGTAGTGACCAAAAGAACCATTGAGGGCACACTAAGCATTTTGAAGGCGTGTCTCAATTCCAAGACTGTGAAGCGAGTTGTTTACACCTCTAGTGCCTCTGCTGTGAATTTCAATGGCAAAGTAGAAATGATGGATGAAAGCTATTGGAGCGATGTTGATTGTCTAAGAGCTTCAAAGCCATTTGGTTGGTCATATGCGGTTTCAAAGGCATTGACAGAAAAGGCAGTGCTTGAGTTTGGAGAACAAAATGGATTGGATGTTGTCACACTAATTCCACCTTTTGTTTTTGGACCCTTCATTTGTCCAAAGCTTCCTAGCTCAGTCGATGCTACACTGAATTTCGCATTTGGCAACAAAGGACCATTTGGTTTGCTACTTCAGACTGGAATGGTGCATGTGGATGACGTGGCTAGAGCGCATATATTTCTGCTGGAACATTCTAATCCAAAAGGGAGGTATAATTGTTCACAATGTTTGGTAACTTATGAAAGGATATCTGAACTTGTTTCTGCCAAATACCCGAAATTTCAGCCACCAACATTAGACTCGTTAAAACAAATTGAAGGTATCAAGTTTCCAGGTTTATCGACAAAGAAGCTACTAGATGCTGGATTCACGCTCAAGTATGGACTAGAGAAAATGGTTGATGACGCAATTCAATGCTGCCAAGAAAAGGGTTACCTATTATag 1962 0.4164 MEHGKGRVCVTGGTGFIGSWIVKRLLEDGYSVNTTVRPDPVEHKKDVSFLTSLPGASQRLQIFSADLSNPESFSAAIEGCVGVFHVATPVDFELKEPEEVVTKRSIDGTLGILKACLNSKTVKRVVYTSSASALNSNGKGEMVDESSWSDVDDLRASKPHGWSYAVSKTLTEKSVLEFGEQNGLDVVTLLPTSVFGPFICPQIPISIINILKEIYAGEKSAFGFMLQTPMVHVDDVARAHIFLLEHPNPKGRYNCSQCLVTFERISELVSAKYPEFQLETQTEGMKVPDLSSKKLTDSGFVFKYGLEEMLDDAIQCCKEKGLPVSQMEESKGRVCVTGGTGFIGSWIIKKLLQDGYSVNTTVRTDPEHKKDVSFLTSLPGASQRLQIFSADLSNPESFSAAIEGCIGVFHVATPIDFELKEPEEVVTKRTIEGTLSILKACLNSKTVKRVVYTSSASAVNFNGKVEMMDESYWSDVDCLRASKPFGWSYAVSKALTEKAVLEFGEQNGLDVVTLIPPFVFGPFICPKLPSSVDATLNFAFGNKGPFGLLLQTGMVHVDDVARAHIFLLEHSNPKGRYNCSQCLVTYERISELVSAKYPKFQPPTLDSLKQIEGIKFPGLSTKKLLDAGFTLKYGLEKMVDDAIQCCQEKGYLL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0067 653 PANTHER VESTITONE REDUCTASE-LIKE 332 644 - -
Ssu2g0067 653 Pfam NAD dependent epimerase/dehydratase family 334 579 IPR001509 -
Ssu2g0067 653 Pfam NAD dependent epimerase/dehydratase family 8 254 IPR001509 -
Ssu2g0067 653 CDD FR_SDR_e 8 300 - -
Ssu2g0067 653 PANTHER VESTITONE REDUCTASE-LIKE 6 315 - -
Ssu2g0067 653 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 315 - -
Ssu2g0067 653 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 332 644 - -
Ssu2g0067 653 Gene3D - 5 322 - -
Ssu2g0067 653 Gene3D - 331 652 - -
Ssu2g0067 653 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 327 646 IPR036291 -
Ssu2g0067 653 CDD FR_SDR_e 334 629 - -
Ssu2g0067 653 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 318 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0067 Ssu-Chr2 5844165 5890284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0067 326 643 Miscellaneous Gene Families AT4G27250 36.937 2.17e-58 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0067 - K13265 gmx:100786878 544.658