Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0065 ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTTCTCCACCCTCACTGCTCTTCTTCTCAATCCTACCCTCTTGCTAATTACTCAAACAATAACAGGTTTGGAATTCAATTACAAGGAGCCTCATCTTCCTATGCAGCTCCTCCTTCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATCAACAAGATAAGCCTCACAAATCAGCAGCACCAAAATGAACCCTCAAAGGTTATAGAAGAGGACAAGAAAGTGGACAACAAACATGAGAGAGCTGAAGATGGTGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCAAGAATGGATACTTCTTCTGATCTGGGGTCATCAAGGATGGCCTCAACTTGTATGGAAATGGGTGAAAAAGGGGAAGTGAATATGATTTCTGAACAGCCTTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCATCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGGCCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGATCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCATGGCATAAAACCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTAAAAGGTGATTGGAGAACACATGAGAAGAACTGTGGCAAAATATGGTATTGTTTATGTGGGTCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTATGGCCATGGTGCATTTGGCATTGATTGCTtgcaagaagaagatgaagcagCTTCTGAAATTGAACATGATGGGGAGAGTTCAATCTGa 999 0.4204 MTDPQSNLFHEWFNFMLLHPHCSSSQSYPLANYSNNNRFGIQLQGASSSYAAPPSSPPLREALPLINKISLTNQQHQNEPSKVIEEDKKVDNKHERAEDGDDETVTVALHIGLPRMDTSSDLGSSRMASTCMEMGEKGEVNMISEQPLDRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAASEIEHDGESSI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0065 332 Gene3D Classic Zinc Finger 234 304 - -
Ssu2g0065 332 SUPERFAMILY beta-beta-alpha zinc fingers 239 275 IPR036236 -
Ssu2g0065 332 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 327 - -
Ssu2g0065 332 SMART c2h2final6 171 193 IPR013087 -
Ssu2g0065 332 SMART c2h2final6 255 275 IPR013087 -
Ssu2g0065 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Ssu2g0065 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Ssu2g0065 332 Gene3D Classic Zinc Finger 170 193 - -
Ssu2g0065 332 SUPERFAMILY beta-beta-alpha zinc fingers 167 193 IPR036236 -
Ssu2g0065 332 Pfam C2H2-type zinc finger 171 190 - -
Ssu2g0065 332 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Ssu2g0065 332 MobiDBLite consensus disorder prediction 80 102 - -
Ssu2g0065 332 PANTHER ZINC FINGER PROTEIN WIP2 1 327 IPR043584 GO:0003700|GO:0010468
Ssu2g0065 332 MobiDBLite consensus disorder prediction 72 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0065 Ssu-Chr2 5778154 5780501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0065 1 325 C2H2 Transcription Factor Family AT3G57670 54.354 2.18e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g0065 zf-C2H2_6 2.6e-05 CL0361