Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0063 AtgtgcctttttcttttttttgtgcagttgttgttgttgaaggGTACAGTGTTGTGTGGTGTTTGTTGGTTTTTTTCTTCAGAGTACAAAATGAATGATGGCAGACAAATGGGGGTGCATTACCTAGACGCTGGGTTCCCTTATGCTGTTAATGAAAACTTCGTGGATTTCTTTCAAGGATTCACACATGTGCCCCTGAATTATGCCTTTGCTGGCTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAATCCCTATAAGTTTGGATTGTCTGGTCCTGGGAGTACATCTTACTATAGTTCTTATGAGGTAAATGGTCATTTGCCGAGAATGGAGATTGATAGGGCTGAGTGGGAGTACCCTTCGACAATAACCACTGTAGAACCAGCTACAGCAGAGTCTCCACCTAGAAGAGATGGTGTCACGAGCATGCAGACTATTCCTGAAGAATGCAGTCCAAATCATCATGAGTCCAACAGTAGTAGCCAGGTTATATGGCAAGACAACATTGATCCTGATAATATGACTTATGAGGAACTACTGGACCTGGGGGAGGCAGTTGGGACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATATGCTTCCAACCTCAAAGTACAAATTTGGTAgcttattcaaaagaaaaaattctggGAAAAGGTGTGTAATTTGTCAGATGACATACAGAAGAGGTGACCAGCAAATCAAATTGCCATGCAGCCATGTCTATCATGGTGAATGCATCACCAAGTGGCTTAGCATTAACAAGAAATGCCCTGTTTGCAACACTGAGGTTTTTGGGGAGGAATCACCGCACTAG 831 0.4007 MCLFLFFVQLLLLKGTVLCGVCWFFSSEYKMNDGRQMGVHYLDAGFPYAVNENFVDFFQGFTHVPLNYAFAGSMPDQESVYWSMNMNPYKFGLSGPGSTSYYSSYEVNGHLPRMEIDRAEWEYPSTITTVEPATAESPPRRDGVTSMQTIPEECSPNHHESNSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDMLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQIKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESPH 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0063 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 270 IPR013083 -
Ssu2g0063 276 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Ssu2g0063 276 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 31 275 IPR033276 GO:0004842|GO:0016567|GO:0046621
Ssu2g0063 276 SUPERFAMILY RING/U-box 224 270 - -
Ssu2g0063 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 31 275 - -
Ssu2g0063 276 Pfam Ring finger domain 224 266 IPR001841 -
Ssu2g0063 276 SMART ring_2 225 265 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0063 Ssu-Chr2 5649424 5655559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0063 39 276 C3H Transcription Factor Family AT3G63530 55.649 1.01e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0063 K19045 - gmx:100792734 494.197