Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0060 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAATGAACAACATTAAGAGCAAGTTAAGAAAAGGGTTGTGGTCACCTGATGAAGATGAGAAGCTCATAAGGTATATGTTGACAAATGGACAAGGGTGTTGGAGTGACATTGCAAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGACCTCAAGCGTGGTGCATTCTCACCCCAAGAGGAAGACCTCATCATTCATTTGCATTCCATTCTTGGCAATAGGTGGTCTCAGATTGCAACACGTCTCCCTGGCCGCACAGACAATGAGATAAAGAATTTCTGGAACTCCACATTGAAGAAAAGGTTGAAAACTAACACTTCTACTCCCTCACTAAACAACAGCACTGACTCATCAGAGTCTAAAGATGTTTTGAGTGGGATCTTGCCCTTTAATGAACATGACATCATGACCATGTGCATGGATTCCTCCTCATCAATATCATCCATGCAAGCAATGGTTTTGCCTGACCAATTTGACCCCTTTTCCATGTTGGTAAATAATCAGTGTCACATGACTAATGTTTCAGCAGATTTTCCCAACATGCCTGCATGCTTGACCCAAATTGGCATGGTAGATGGGCATCAAGGGAATTATGGGATAATGGAGCCTAATAAAATGGGGCTAGGAAGAGACTTCTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAAGCAATGGTGTCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGATTCCTTCAATAACACTGATAAGATTCAGGGCTCCAAAGTAGAGGACTTAATTGGAATTGGGAATCATGGGCAaggggaaaattttaaaatgggagAGTGGGATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGATTTTTAA 942 0.4066 MRKPDLMANKDKMNNIKSKLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKTNTSTPSLNNSTDSSESKDVLSGILPFNEHDIMTMCMDSSSSISSMQAMVLPDQFDPFSMLVNNQCHMTNVSADFPNMPACLTQIGMVDGHQGNYGIMEPNKMGLGRDFSLPSLESRSIESNGVPIDVKSHNNHFNYDSFNNTDKIQGSKVEDLIGIGNHGQGENFKMGEWDLENLMQDITSFPFLDF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0060 313 Gene3D - 19 75 - -
Ssu2g0060 313 CDD SANT 77 120 IPR001005 -
Ssu2g0060 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Ssu2g0060 313 PANTHER TRANSCRIPTION FACTOR MYB83 1 313 - -
Ssu2g0060 313 CDD SANT 25 69 IPR001005 -
Ssu2g0060 313 Gene3D - 76 146 - -
Ssu2g0060 313 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Ssu2g0060 313 SMART sant 74 122 IPR001005 -
Ssu2g0060 313 SMART sant 21 71 IPR001005 -
Ssu2g0060 313 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Ssu2g0060 313 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Ssu2g0060 313 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Ssu2g0060 313 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Ssu2g0060 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Ssu2g0060 313 PANTHER MYB DOMAIN PROTEIN 55 1 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0060 Ssu-Chr2 5415081 5416881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0060 1 313 MYB Transcription Factor Family AT3G08500 47.191 2.82e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu2g0060 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0060 K09422 - gmx:100784755 582.793