Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0055 ATGGTGATCACCTTGAAGCAAGAGCTCATAATGAGCAACTTCAAGACCATCGATGGTCACGACGCCAACGTGCACATCGCCTATGGTGACTGCATCACCATCCAGTTCATTGCCAACGTCATCATCCATGACCTCTATATCCATCATTGCAAGCAGAACAACAATGCCATAGTTTGTAGCTCCCCTTCCTATTATGGTTGTAAGACCCTCGTTGACGATGATGGCATTTCAGTAGAATTTTAA 243 0.4486 MVITLKQELIMSNFKTIDGHDANVHIAYGDCITIQFIANVIIHDLYIHHCKQNNNAIVCSSPSYYGCKTLVDDDGISVEF 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0055 80 PANTHER PECTATE LYASE 1 78 - -
Ssu2g0055 80 PANTHER PECTATE LYASE 18-RELATED 1 78 IPR045032 GO:0030570
Ssu2g0055 80 SUPERFAMILY Pectin lyase-like 1 78 IPR011050 -
Ssu2g0055 80 Gene3D - 1 80 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0055 Ssu-Chr2 5189378 5189620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0055 1 78 Polysaccharide Lyase AT4G13710 64.103 2.58e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0055 K01728 - csv:101207204 119.012