Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0044 ATGCCAGGGAAACCTGACACTGATGATTGGCATGTAGAGCGTGGTGAGCAGATTCAGTTTCAGTCTTCCATTTACTCTCATAACCAGCCTTGGTGGCGCGGAGTGAGGGAAAATGCCTCCAAATCATCTTCAGCTGATCAGTTAAAGGATTCAATCATGAATGGTGTCACACGGTCTGTGACCAATGAAGGGTTAGCTGATGGGGTTGATTTCAATAAGCAAAGGCAGTCTATGGTTTCTTCTTCACTGCCTGGAGCTGATAAGTCAGGTGGAGGTGTTGCTAAAGAGTACGAAAACATCAAACATGCCCTGTCCTCAACCCCATTTACCATGGACAAACACCTTGCTCCAAATCCCAAGATGGAACTTGTCGGTCATTCAGTTGTTTTAACATCTCCTTATTCAGATGCACAGTATGGTCAAATCTTGACTACTTACGGGCAACAAGTTATGATAAACACTCAGTTGTATGGAATGCATCATGCTAGAATGCCTTTGCCACTTGAAATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATTTTGCGGCGAAGACAGTCACGTGCTAAGGCTGAGCTtgaaaagaaagtaattaaaaatagaaagCCATACCTCCATGAATCCCGTCACCTACATGCCATGAGAAGGGCAAGAGGCAATGGTGGTCGCTTTCTTAACACAAAGAAGCTTGAACATAACAATTCTAATGCCACTTCAGAAAAACGCAACAATACTGGTGCAAACCCGTCAACAAACTCACCTAACACTCAACATTTGCTTACCAACAATAAGAATCTAGGCTCATCAAACGCACCACAGTCCACGATTCAGGACATGCATAGAGTGCAGAGTTTCAATATTGGTTACCATAATGGAAATGGTCTTACGGCATTATACCTTTCGCAAGCAAATGGAAAAAAGGAGGGAGACTACTTTGGTAAAGAGAGGGACCCTAATGGAGCTTTCAATTAA 984 0.4248 MPGKPDTDDWHVERGEQIQFQSSIYSHNQPWWRGVRENASKSSSADQLKDSIMNGVTRSVTNEGLADGVDFNKQRQSMVSSSLPGADKSGGGVAKEYENIKHALSSTPFTMDKHLAPNPKMELVGHSVVLTSPYSDAQYGQILTTYGQQVMINTQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKNRKPYLHESRHLHAMRRARGNGGRFLNTKKLEHNNSNATSEKRNNTGANPSTNSPNTQHLLTNNKNLGSSNAPQSTIQDMHRVQSFNIGYHNGNGLTALYLSQANGKKEGDYFGKERDPNGAFN 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0044 327 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Ssu2g0044 327 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 23 322 IPR001289 GO:0003700|GO:0006355
Ssu2g0044 327 PANTHER TRANSCRIPTION FACTOR Y SUBUNIT A-1, PUTATIVE-RELATED 23 322 - -
Ssu2g0044 327 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Ssu2g0044 327 MobiDBLite consensus disorder prediction 223 277 - -
Ssu2g0044 327 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Ssu2g0044 327 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
Ssu2g0044 327 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Ssu2g0044 327 Gene3D - 171 232 - -
Ssu2g0044 327 MobiDBLite consensus disorder prediction 231 277 - -
Ssu2g0044 327 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0044 Ssu-Chr2 2728885 2733789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0044 29 276 CCAAT-HAP2 Transcription Factor Family AT5G12840 40.769 5.25e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Ssu2g0044 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0044 K08064 - gmx:100782085 521.546