Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0031 ATGTCGCTGGTTGCCAAAAGCATTCTGTTACTATTCGTGTTTACTTTGCTATTGGTGAGCAATGTTCTTGGAAGAACAAATGTGACTATCATTAATGATCTAGAGGGAAATCAAGATCTAACCCTTCACTGCAAATCTAAAGATGATGATCTCGAAATGCAGGTTCTCGCTTTTAATGAAGTCTATTCATGGAATTTTGGGTATCACCATTTTGGGAGGACACTATACTTTTGTTCCTTTAAATGGGAAGATACTCCTTTAATGTGGTATAATATAGTCGATCAATTCAAGGATCGCGAAAAATGCTATAAGTTGTGCTATTGGTACATTAAGGAAAATGGACCATGCAGAATAGAAAGTGACCATCTGAGTTGCTATAAGTGGAAAgtTAGACAGTCACGCACCTCTACGTCACCAAACCAACTTCTAAATCTTTATCAAACCAATGTTTAA 453 0.3642 MSLVAKSILLLFVFTLLLVSNVLGRTNVTIINDLEGNQDLTLHCKSKDDDLEMQVLAFNEVYSWNFGYHHFGRTLYFCSFKWEDTPLMWYNIVDQFKDREKCYKLCYWYIKENGPCRIESDHLSCYKWKVRQSRTSTSPNQLLNLYQTNV 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0031 150 PANTHER LEGUMINOSIN GROUP486 SECRETED PEPTIDE 16 123 - -
Ssu2g0031 150 PANTHER - 16 123 IPR010264 -
Ssu2g0031 150 Pfam Plant self-incompatibility protein S1 27 128 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0031 Ssu-Chr2 1945754 1955090 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0031 25 121 Carbohydrate Esterase AT3G16970 43.564 5.14e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0031 - - pvu:PHAVU_008G062900g 127.102