Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0026 ATGGTACAGTCCCTTTTAAAAGTTGTACTGTCAGGAACCCTTTACCAGAATCATGTCAGGGAGatgttaaacattttaaatcttGTTTGGCCAAAGTTTTTGAAGATGGAAACATCTAGGCTTATTGTCAGACGCATTCATAGTAGAGTTCATATACCGGGTGTGAGAGGCTTCTATGACTTAGTTGAAAACACTTCGCAGAAGGACACggattttaaaaagaaagtggCAGTCATACGAGATTTGCATGAGATGACGAGCAAGGCTTGTGGAGAGGGCATATCATTAGTCGGAGCATCCCgcataattattttggatgttCATCTCAATCCTTTGGTTACTCACCGAGCTATTGGTCGTGCATTTAGACTGGGCCAGAAGAAGAAAGTCTTCGTGTATCGATTGGCATCTGCTGATTCTCCTGAAGAGGAAGATGACAGTACTTGTTTCAAGAaggaattaatttcaaaaatgtggTTCGAATAG 486 0.3642 MVQSLLKVVLSGTLYQNHVREMLNILNLVWPKFLKMETSRLIVRRIHSRVHIPGVRGFYDLVENTSQKDTDFKKKVAVIRDLHEMTSKACGEGISLVGASRIIILDVHLNPLVTHRAIGRAFRLGQKKKVFVYRLASADSPEEEDDSTCFKKELISKMWFE 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0026 161 PANTHER PROTEIN CHROMATIN REMODELING 35 87 161 - -
Ssu2g0026 161 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 88 IPR044567 GO:0080188
Ssu2g0026 161 Gene3D - 58 161 IPR027417 -
Ssu2g0026 161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 159 IPR027417 -
Ssu2g0026 161 CDD SF2_C_SNF 85 135 - -
Ssu2g0026 161 PANTHER PROTEIN CHROMATIN REMODELING 35 2 88 - -
Ssu2g0026 161 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 87 161 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0026 Ssu-Chr2 1654517 1655419 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0026 85 143 RAD5 or RAD16-like Gene Family AT5G43530 44.068 1.03e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0026 K10875 - gmx:100780454 147.132