Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0023 ATGGGAAAGAAGAACAAAGTGAAGGAAAATGGAGGCAAAGATCATTGCTCCTCAACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGcTGGAGGAGACATTTAGTGAGGTTGGACCTGTCAGGCGTTGCTTCATGGTCACACAGAAAGGGTCAGCCCAGCATCGTGGTTTCGGTTATGTCCAATATGCTGTTGAGGAAGATGCTAACCGTGCCATTGAGCTGAAGAATGGTTCATCTGTTGAAGGCCGGAAAATTGTAGTGAAGCACGCAATGCCTCGTCCTCCCCGTGAAGAACGACAATCAAAACCACATAAAGCTGGCAAGACAGATGATCTCACGATGCCAAAAGACGATGATGAAGACGGCAGATCATCAGGAGCAAAGAAGCATGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTCACAAGTCAACAAAAAAACTCAAGGAAGCCCACAGAAACAAAAAAAGCAGCTCTTTGTAATGATGTGGCAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTTCACCATCAAGCCAGAGAGATTGGCACTGTGTGTTCTATTAAGTACCCTCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCCTACAAGATGGCTGTACTTTGGATGCTTCGGCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACGTTACATAAGAAAGGGATAGGAGGGGGAACTGTTGGGCACGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTTAAGGGTATGTGTGGGATGTATTTATTCCACACAAGTCAGACACAGGGCCATTCAAAAGCTCAATGGATCAAAGTTTGCAAAACGACTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGCAGTGATACAAATAATGCTCTTACCTCAGAGAAAGGACGACAAAAGATGAGCAATGATGATAGCAGTGCCACTGAGGAAGATGTTGAGCTTGTTGACAAACGATCTGGTCGAGAAGATGATAGTGATACAGACTACTCTAGTACCATGGAGGAAGAAGGCGCTGCTCCTGAAGATAATTTTGATAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAACTTGCTTACATCCTCCTGCAAAGGAACATCTGTAAACAGTGATTCTATGTTGTCCTTGGAAAACAACGATCCGAAATCCAATGAAGTTGTTGAAGATGCAGATGGAAAAGTATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTTGAAGCTGGAAAATTCTAGCAGAAACAACTCGTCAAATCCTAAAGGAACAGAAGAAGTTGATTTGCAGAGAacagtttttataaataatcttCCCTTTGAATGTGATAATGAAGAAGTAAAGCAACGATTTTCTGGATTTGGGGAAATAGAATACTTTGTTCCTGTTCTCCACCAAGTTACCAAGCGACCGAGAGGGACaggttttctaaaatttaaaactgtGGAAGCAGCTAATATTGCAATTTCAACTGCCAGTGCTGCTTCTGGGATGGGTATTTTACTGAAAGGTAGaccattaaaagttttaaaggcTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCATCGCAATCTTTACTTGTCAAAGGAGGGACTTATTCTTGAGGAAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGttggaaaggaaaaagaagacaaaGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATAGATGCAGTCATCTCTAGAGCTACGAAGCAAAAACCTGTTATTCGGCAGATAAAGTTTTGA 1992 0.4016 MGKKNKVKENGGKDHCSSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQYAVEEDANRAIELKNGSSVEGRKIVVKHAMPRPPREERQSKPHKAGKTDDLTMPKDDDEDGRSSGAKKHVSVLKEEEVQVTSQQKNSRKPTETKKAALCNDVADEGGCSEKQRVARTVIFGGLINSDMAEEVHHQAREIGTVCSIKYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKGIGGGTVGHANWVERAPRLRNGSLLSETFLLRVCVGCIYSTQVRHRAIQKLNGSKFAKRLIAVDWAVPKKIFSSDTNNALTSEKGRQKMSNDDSSATEEDVELVDKRSGREDDSDTDYSSTMEEEGAAPEDNFDKEADIARKVLNNLLTSSCKGTSVNSDSMLSLENNDPKSNEVVEDADGKVSNESEKVSGVLKLENSSRNNSSNPKGTEEVDLQRTVFINNLPFECDNEEVKQRFSGFGEIEYFVPVLHQVTKRPRGTGFLKFKTVEAANIAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLSKEGLILEETTAAEGVSASDMLKRQELERKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKF 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0023 663 MobiDBLite consensus disorder prediction 87 159 - -
Ssu2g0023 663 MobiDBLite consensus disorder prediction 336 388 - -
Ssu2g0023 663 PANTHER RNA-BINDING PROTEIN 28 17 120 - -
Ssu2g0023 663 MobiDBLite consensus disorder prediction 340 370 - -
Ssu2g0023 663 CDD RRM3_RBM28_like 471 552 - -
Ssu2g0023 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 471 554 IPR000504 GO:0003723
Ssu2g0023 663 MobiDBLite consensus disorder prediction 409 466 - -
Ssu2g0023 663 Gene3D - 2 110 IPR012677 -
Ssu2g0023 663 Gene3D - 408 568 IPR012677 -
Ssu2g0023 663 SUPERFAMILY RNA-binding domain, RBD 471 643 IPR035979 GO:0003676
Ssu2g0023 663 PANTHER RNA-BINDING PROTEIN 28 300 653 - -
Ssu2g0023 663 MobiDBLite consensus disorder prediction 445 466 - -
Ssu2g0023 663 MobiDBLite consensus disorder prediction 90 140 - -
Ssu2g0023 663 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Ssu2g0023 663 PANTHER RNA-BINDING MOTIF PROTEIN 14B 17 120 - -
Ssu2g0023 663 SMART rrm1_1 472 550 IPR000504 GO:0003723
Ssu2g0023 663 SMART rrm1_1 19 92 IPR000504 GO:0003723
Ssu2g0023 663 Coils Coil 549 576 - -
Ssu2g0023 663 SUPERFAMILY RNA-binding domain, RBD 17 260 IPR035979 GO:0003676
Ssu2g0023 663 MobiDBLite consensus disorder prediction 425 439 - -
Ssu2g0023 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 473 531 IPR000504 GO:0003723
Ssu2g0023 663 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Ssu2g0023 663 MobiDBLite consensus disorder prediction 409 424 - -
Ssu2g0023 663 CDD RRM1_RBM28_like 19 97 - -
Ssu2g0023 663 PANTHER RNA-BINDING MOTIF PROTEIN 14B 300 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0023 Ssu-Chr2 1621639 1629399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0023 17 114 Eukaryotic Initiation Factors Gene Family AT4G34110 35.714 7.24e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0023 K14573 - gmx:100791823 1036.17