LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g0022	ATGAAATGGAAAGGCTGGAGCCTcggaaaagaaatttttgtaatCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCAATGGAAAGATTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGTTCAATCAAGGCATGTGGAGAGGGCATATCACTGGTTGGGGCATCCCGCATAATAATTTTGGACGTTCATCTCAATCCTTCGGTTACTCGTCAAGCTATTGGTCGTGCATTCAGACCGGGCCAGAAGAAGAAAGTCATCGTGTATCGATTGGTATCTGCTGATTCTCCAGAAGAGGAAGATCATAGTATTTGTTTCAAGAaggaattaatttcaaaaatgtttgaATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGGCGGTTGAGGTGAAAGAGTGTGGTGATCTCTTTCTTGAAAGTCCACTGTTAGGGGAGAATGTAAAAGCATTGTATGAAAGAATTAGGGGTTTCATAAAACCCTGGATTACATTACCTAGAGCGTCAAACAGTGGAGAATTGGTGCGCGACAGTGGCGACACGGTGCAGCCCCTAACACGTCGTTGGAACAGAGAAAGGCAACGCAACTCTGCACTCCTCTCCCTGCTCGGCGCTCTCATCGCTGCTCCTCCGTGCACGGTTGCTCGCCGTCGAGCCGTCGGCTTCTGCTCCCTGCCTCCCTAA	693	0.4517	MKWKGWSLGKEIFVISGESSSEHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVIVYRLVSADSPEEEDHSICFKKELISKMFEWNEYCGDRAFEVEAVEVKECGDLFLESPLLGENVKALYERIRGFIKPWITLPRASNSGELVRDSGDTVQPLTRRWNRERQRNSALLSLLGALIAAPPCTVARRRAVGFCSLPP	230

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g0022	230	Gene3D	-	2	144	IPR027417	-
	Ssu2g0022	230	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	1	133	IPR001650	-
	Ssu2g0022	230	SMART	helicmild6	2	82	IPR001650	-
	Ssu2g0022	230	CDD	SF2_C_SNF	9	93	-	-
	Ssu2g0022	230	PANTHER	PROTEIN CHROMATIN REMODELING 35	1	157	-	-
	Ssu2g0022	230	Pfam	Helicase conserved C-terminal domain	10	81	IPR001650	-
	Ssu2g0022	230	PANTHER	SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED	1	157	IPR044567	GO:0080188
	Ssu2g0022	230	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	9	141	IPR027417	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g0022	Ssu-Chr2	1614728	1620347	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g0022	9	110	RAD5 or RAD16-like Gene Family	AT5G43530	33.333	4.36e-12	63.5

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g0022	K10875		-	gmx:100780454	300.056

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