Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0022 ATGAAATGGAAAGGCTGGAGCCTcggaaaagaaatttttgtaatCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCAATGGAAAGATTTAACAATTCTCCTGATGCCAAAGTCTTCTTTGGTTCAATCAAGGCATGTGGAGAGGGCATATCACTGGTTGGGGCATCCCGCATAATAATTTTGGACGTTCATCTCAATCCTTCGGTTACTCGTCAAGCTATTGGTCGTGCATTCAGACCGGGCCAGAAGAAGAAAGTCATCGTGTATCGATTGGTATCTGCTGATTCTCCAGAAGAGGAAGATCATAGTATTTGTTTCAAGAaggaattaatttcaaaaatgtttgaATGGAATGAGTATTGTGGTGATCGAGCTTTTGAAGTTGAGGCGGTTGAGGTGAAAGAGTGTGGTGATCTCTTTCTTGAAAGTCCACTGTTAGGGGAGAATGTAAAAGCATTGTATGAAAGAATTAGGGGTTTCATAAAACCCTGGATTACATTACCTAGAGCGTCAAACAGTGGAGAATTGGTGCGCGACAGTGGCGACACGGTGCAGCCCCTAACACGTCGTTGGAACAGAGAAAGGCAACGCAACTCTGCACTCCTCTCCCTGCTCGGCGCTCTCATCGCTGCTCCTCCGTGCACGGTTGCTCGCCGTCGAGCCGTCGGCTTCTGCTCCCTGCCTCCCTAA 693 0.4517 MKWKGWSLGKEIFVISGESSSEHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVIVYRLVSADSPEEEDHSICFKKELISKMFEWNEYCGDRAFEVEAVEVKECGDLFLESPLLGENVKALYERIRGFIKPWITLPRASNSGELVRDSGDTVQPLTRRWNRERQRNSALLSLLGALIAAPPCTVARRRAVGFCSLPP 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0022 230 Gene3D - 2 144 IPR027417 -
Ssu2g0022 230 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 133 IPR001650 -
Ssu2g0022 230 SMART helicmild6 2 82 IPR001650 -
Ssu2g0022 230 CDD SF2_C_SNF 9 93 - -
Ssu2g0022 230 PANTHER PROTEIN CHROMATIN REMODELING 35 1 157 - -
Ssu2g0022 230 Pfam Helicase conserved C-terminal domain 10 81 IPR001650 -
Ssu2g0022 230 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 157 IPR044567 GO:0080188
Ssu2g0022 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 141 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0022 Ssu-Chr2 1614728 1620347 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0022 9 110 RAD5 or RAD16-like Gene Family AT5G43530 33.333 4.36e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0022 K10875 - gmx:100780454 300.056