Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0013 ATGTCACAAGCAATGGTGAAGGACACTACCTTCTATGACATATTAGGTGTCAATGTTGATGCATCTGCTGCAGAGATCAAGAAGGCTTATTATATCAAgGCAAGAATAGTTCACCCCGATAAAAATCCTGGGGATCCTAAGGCCGCAGAAAATTTTCAGAAACTTGGTGAGGCTTACCAGGTTTTAAGTGATCCTGGGAAGCGTGAAGCATATGATAAGCATGGAAAGGAGGGAGTACCACAagaTTCCATGATGGACCCTGCAGCTGTATTTGGAATGCTTTTTGGAAGTGAATTTTTTGAAGAATATATCGGAAAACTTGCACTGGCTTCTTTAGCATCTATAGAAATTGAGGAAGACACACAGGATCCTGAAGTTCTGAGGCAGAGAATtcaagaaaagatgaaaGCATGGCAGAAGGAAAGGGAGCAGAAGCTTGCATCAATTCTGAAAGATCGCCTGCAACCATTTGTTGATGGTCAAGAAGATGAATTTACATCATGGGCAAAGTCAGAAGCACGTAATCTTTCTAAAGCTGCTTTTGGAGAGGCCATGCTACATACAATTGGTTATATCTACACTCGAAAAGCTGCAAGAGAACTTGGAAAGGATATACGGTATATGAACGTTCCCTTTTTGGCAGAATGGGTGCGAGACAAAGGACACCGTATAAAATCACAAGTAACAGCAGCCTCAGGAGCTGTGTCCCTAATTCAAATACAAGAAGAGCTCAAGAAGCTAAACCAAGGAGAGAACAAAGAAGAAAGTATAGTCAAAGCTATTGAAGATAAGAAGGATGCCATGATTAATTCCCTATGGCAGATCAACGTGATTGATATTGAATCAACTCTGTCACATGTTTGCCAAGCAGTTCTTAAAGATCCCAGTGCGTCCAAAGATGTTCTGAAGTCTCGGGCCGAAGCATTGAAAAAGTTAGGAACTATCTTTCAAGGTGCCAAGGCTGCCTATAGCAGAGAAAACAGCCTACGCAGAGAAAGCGACAAACCAGTAGATGCTGCTTCCACATCATAG 1032 0.4128 MSQAMVKDTTFYDILGVNVDASAAEIKKAYYIKARIVHPDKNPGDPKAAENFQKLGEAYQVLSDPGKREAYDKHGKEGVPQDSMMDPAAVFGMLFGSEFFEEYIGKLALASLASIEIEEDTQDPEVLRQRIQEKMKAWQKEREQKLASILKDRLQPFVDGQEDEFTSWAKSEARNLSKAAFGEAMLHTIGYIYTRKAARELGKDIRYMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEESIVKAIEDKKDAMINSLWQINVIDIESTLSHVCQAVLKDPSASKDVLKSRAEALKKLGTIFQGAKAAYSRENSLRRESDKPVDAASTS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0013 343 CDD DnaJ 10 64 IPR001623 -
Ssu2g0013 343 Coils Coil 128 148 - -
Ssu2g0013 343 Pfam DnaJ domain 11 72 IPR001623 -
Ssu2g0013 343 Gene3D DnaJ domain 1 90 IPR036869 -
Ssu2g0013 343 PRINTS DnaJ domain signature 67 86 IPR001623 -
Ssu2g0013 343 PRINTS DnaJ domain signature 47 67 IPR001623 -
Ssu2g0013 343 PRINTS DnaJ domain signature 12 30 IPR001623 -
Ssu2g0013 343 PRINTS DnaJ domain signature 30 45 IPR001623 -
Ssu2g0013 343 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Ssu2g0013 343 SMART dnaj_3 9 67 IPR001623 -
Ssu2g0013 343 SUPERFAMILY Chaperone J-domain 5 104 IPR036869 -
Ssu2g0013 343 Pfam X-domain of DnaJ-containing 139 331 IPR026894 -
Ssu2g0013 343 PANTHER BNAA01G05380D PROTEIN 5 333 - -
Ssu2g0013 343 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 5 333 - -
Ssu2g0013 343 ProSiteProfiles dnaJ domain profile. 10 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0013 Ssu-Chr2 957668 964004 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0013 12 72 Miscellaneous Gene Families AT1G16680 52.381 4.33e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0013 - - gmx:100787075 611.683