Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0005 ATGGGAAAGAAGAACAAAGTGAAGGAAAATGGAGGCAAAGATCATTGCTCCTCAACACTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGcTGGAGGAGACATTTAGTGAGGTTGGACCTGTCAGGCGTTGTTTCATGGTCACACAGAAAGGGTCAGCCCAGCATCGTGGTTTCGGTTATGTCCAATATGCTGTTGAGGAAGACGCTAACCGTGCCATTGAGCTGAAGAATGGTTCATCTGTTGAAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTTCTCCCCGTGAAGAACGACAATCAAAACCACATAAAGCTGGCAAGACAGATGATCTCATGATGCCAAAAGACGATGATGAAGACGGCAGATCATCAGGAGCAAAGAAGCATGTTTCAGTTTTGAAGGAAGAAGAAGTACAAGTCACAAGTCAACAAAAAAACTCAAGGAAGCCCACAGAAACAAAAAAAGCAGCTCTTTGTAATGATGTGGCAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTCATAAATTCTGATATGGCTGAAGAAGTTCACCGTCAAGCCAGAGAGATTGGCACTGTGTGTTCTATTAAGTACCCTCTTTCAAGGAAAGATCTTGAGCAACATGGTCTCCTGCAAGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACGTTACATAAGAAAGGGATAGGAGGGGGAAATGTTTGGGCACGCCAACTGGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTTAAGGTCAAAGACAATGAAATAAGAGAGATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACACAAGTTAGACACAGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGTAAGCTAGATGCAGAAAAGGCCATTCAAAAGCTCAATGGATCAAAGTTTGCAAAACGACTCATAGCTGTTGATTGGGCTGTTCCAAAAAGATATTTAGCAGTGATACAAATAATGCTCTTGCCTCAGAGAAAGCTGATGGGTAGATTTGTGGAATAG 1134 0.4268 MGKKNKVKENGGKDHCSSTLFVSNLPYSFSNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQYAVEEDANRAIELKNGSSVEGRKIVVKHAMPRSPREERQSKPHKAGKTDDLMMPKDDDEDGRSSGAKKHVSVLKEEEVQVTSQQKNSRKPTETKKAALCNDVADEGGCSEKQRVARTVIFGGLINSDMAEEVHRQAREIGTVCSIKYPLSRKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKGIGGGNVWARQLGGEGSKTQKWKLIVRNLPFKVKDNEIREMFSSAGYVWDVFIPHKLDTGLSKGFAFVKFTCKLDAEKAIQKLNGSKFAKRLIAVDWAVPKRYLAVIQIMLLPQRKLMGRFVE 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0005 377 SMART rrm2_1 277 350 IPR003954 GO:0003676
Ssu2g0005 377 SMART rrm2_1 19 92 IPR003954 GO:0003676
Ssu2g0005 377 MobiDBLite consensus disorder prediction 93 159 - -
Ssu2g0005 377 PANTHER RNA BINDING PROTEIN 8 358 - -
Ssu2g0005 377 MobiDBLite consensus disorder prediction 93 140 - -
Ssu2g0005 377 Gene3D - 2 110 IPR012677 -
Ssu2g0005 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Ssu2g0005 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 276 354 IPR000504 GO:0003723
Ssu2g0005 377 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 8 358 - -
Ssu2g0005 377 Gene3D - 263 359 IPR012677 -
Ssu2g0005 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 278 347 IPR000504 GO:0003723
Ssu2g0005 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Ssu2g0005 377 CDD RRM2_RBM28_like 277 353 - -
Ssu2g0005 377 SMART rrm1_1 19 92 IPR000504 GO:0003723
Ssu2g0005 377 SMART rrm1_1 277 350 IPR000504 GO:0003723
Ssu2g0005 377 CDD RRM1_RBM28_like 19 97 - -
Ssu2g0005 377 SUPERFAMILY RNA-binding domain, RBD 17 260 IPR035979 GO:0003676
Ssu2g0005 377 SUPERFAMILY RNA-binding domain, RBD 272 356 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0005 Ssu-Chr2 700321 705559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g0005 22 97 Eukaryotic Initiation Factors Gene Family AT3G11400 34.211 8.15e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0005 K14573 - gmx:100794821 632.484