Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4266 ATGGAATACGGTGCCTTGGTGCACAATGGTGCATATGGGAGCTTCTCAGATTTTTTTGCCCCAGAAACGGATTTCATTGATGATCTGTTTTTAGAAGGATGCTGGCTGGAAACAACGGTTGGGTGTGGATCGTACCTTAATTGTGGCACGGAGCCTTCAAAGTCAAACACGAGGATGGAGTCAAATGAGGCGCAAGTAATTTTCCAAGAAGAATCAGACCCCGAAAGTTTGATGGTGGGGAAGAGATGGTGGATTGGACCAAGAGCGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTGGTTGCCGTTGGGTACATGAAAGAATACTCCAAGAATTCCAATGTGCTGATTCAGGTATGGGTGCCCGCACGGAGAGGGGATCTCACCACTACATGTACAAGTGCTCAGGATTACCCATACGCTCttgagtataataataataataataataataataataattatgtggATGCAACAAGAGCTTTTCAGTTTCAGGAGGATTGGGTTCATGAGTGGACTCCCAACGTTCGCTTCTTCAGAAGTCACGAGTACCCGCGCATTCAGCAATACGATACACGTGGTGGATCTTTGGCCCTTCCTGTCTTTGAGAGAGGCAGTGGCATATGTCTCGGTGTTGTCGAGATTGTCATGCCCAACAACCCGGAGATTCACAATCTCTGCCATGCCCTTCAGGGTGTTGATTTTGGGAGTTCTTCTCATCAGAACTTCATTCCACCAGTAGTGACCGTGAAGGGTTTCGACGAGTTATACCAAGGTGCATTAAATGAGATAGTAGAAGTTTTGACATGTGTGTGCAAGGCTCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTGTCGACTGTGGATACTGCTAGTTTTGTGGCGGATGTAGAGGTAATGGGATTCCAGGAAGCGTGCTCTGAGTACCACCTTTTGGGGGGACAAGGAGTAGTTGGGACAGCTTTCACAACCACAAAACCTTGTTTTGCAAATGACATAACGGCCTTCAGCAAGGCTGAATATCCTCTGGCACACCATGCTAACATGTTTGGCTTGCATGCTGCTGTGGCCATTCCACTCCGGAGTGTCTCGGCTGACTTTGTGTTAGAGTTTTTCCTGCCAAAGGATTGCCATGACAGCCAAGAGCAGAAGCAGATACTGAATTCATTGTCTGTGCTAGTACAGCAAGCTTGCCGGAGTTTGCATGTTGTCATggaaaaggaggaggaggaattTGCATTGCCTGCCAGTGTAGCGGTACACCATCATGATGGCAAAGAAATggaatcttcatcatcatcctGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCAGTGTCATTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAATTGCAATGAACAGATATTCTCGGAACTAGAAGGGGCAGGCAGTGTTGAGGGTGGGGGAGAAGAATCATACACTACTTTTGGTGGCCGCCGGGGTGGCAGGAAATCGGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTAAAGGACGCTGCCAAGAGCATTGGCGTATGTCCTACGACTCTAAAAAGGATATGCAGACAACACGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCTTTAAGGAAACTTCAACTTGTGATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCGAATTGGCTCTTTCTATACCAGTTTTCCAGAGTTGAGCTCTGCCAGTGGTGTTTCTGACTCATCCAAGatcagtaataataataatgataattctAAGTTTTATTCTGAAAATGGCTTGTATAACCAAGGACAAGGAGCTACTACTTTCAAATCCCCAACGTCGTCTTGCAGTCAGACTTGTAACCCCAGTCCAAACCAACCAACCACTATCACCAACAATGCCGATATTCTGATGTCAGAGAACCAACCACTTCATGCATCAATCCAAGTCCAAGGGGATGCAAAACATTTCACCCACCATCCTATTCAAAGCCTTGAGGCTCTACCTCCCTTGCCACAAACTAGTCTCTGGAACACGGCTACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGGGGATTCAGAGATTTGCAGATGGAGATTGCAAGACGTTTCAATCTAAACGAGATTAGCAACATTCAGCTCAAGTATTTGGATGATACTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGACATAAGTAGATCATCTCAGAGCCGCACAATTAGACTCTTCCTCTTTCAAGCTTCGCCTCTAAATCATGCAAATGCATTTGGCGGCAGCAGCTCCTCCTAA 2472 0.4474 MEYGALVHNGAYGSFSDFFAPETDFIDDLFLEGCWLETTVGCGSYLNCGTEPSKSNTRMESNEAQVIFQEESDPESLMVGKRWWIGPRANPGPSSSVKERLVVAVGYMKEYSKNSNVLIQVWVPARRGDLTTTCTSAQDYPYALEYNNNNNNNNNNYVDATRAFQFQEDWVHEWTPNVRFFRSHEYPRIQQYDTRGGSLALPVFERGSGICLGVVEIVMPNNPEIHNLCHALQGVDFGSSSHQNFIPPVVTVKGFDELYQGALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSTVDTASFVADVEVMGFQEACSEYHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDSQEQKQILNSLSVLVQQACRSLHVVMEKEEEEFALPASVAVHHHDGKEMESSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNEQIFSELEGAGSVEGGGEESYTTFGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIRIGSFYTSFPELSSASGVSDSSKISNNNNDNSKFYSENGLYNQGQGATTFKSPTSSCSQTCNPSPNQPTTITNNADILMSENQPLHASIQVQGDAKHFTHHPIQSLEALPPLPQTSLWNTATFRVKATFGDEKIRFSLQPNWGFRDLQMEIARRFNLNEISNIQLKYLDDTREWVLLTCDADLEECKDISRSSQSRTIRLFLFQASPLNHANAFGGSSSS 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4266 823 ProSiteProfiles RWP-RK domain profile. 521 602 IPR003035 -
Ssu1g4266 823 ProSiteProfiles PB1 domain profile. 725 808 IPR000270 GO:0005515
Ssu1g4266 823 Pfam PB1 domain 725 807 IPR000270 GO:0005515
Ssu1g4266 823 PANTHER PROTEIN NLP2 26 819 - -
Ssu1g4266 823 SUPERFAMILY CAD & PB1 domains 721 810 - -
Ssu1g4266 823 CDD PB1_NLP 726 807 IPR034891 -
Ssu1g4266 823 MobiDBLite consensus disorder prediction 650 674 - -
Ssu1g4266 823 MobiDBLite consensus disorder prediction 501 530 - -
Ssu1g4266 823 SMART PB1_new 725 808 IPR000270 GO:0005515
Ssu1g4266 823 Gene3D - 726 808 - -
Ssu1g4266 823 Pfam RWP-RK domain 535 582 IPR003035 -
Ssu1g4266 823 PANTHER PROTEIN NLP8 26 819 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4266 Ssu-Chr1 103246087 103248891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4266 9 818 NLP Transcription Factor Family AT4G35270 44.062 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Ssu1g4266 PB1 2.4e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4266 - - pvu:PHAVU_009G115800g 1243.02