Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4264 ATGGTTGGACTGCACATACATACAGCAAAGCAAATGGATGGCGCAAAGGAAAACCGTGTGCCTCCGCTTCCGCCCATACCCTCTTCAAATCTTCAAGGCGGTCCAAGAATGGAGAGTGTCAAGCCCCTCCATCACCGGCTGCCTCTCAGCAACATCAACGAGAATGTTATGCCAAAGAAAAACCATTGTCATGTTAACAAAGTAGATTTTTCCCGCAAGTGTACAGCACCCACAGTTCAGCACCACCACCCTCGGCCTCAAGAAACTAAGAAACAGAACCTGTTGGCCCCGACCCTGACTTACCAGTTAGATCATGACATCATAGATATCGATGATGACGAGGATGCCAGTGACAATGCTGCAGTTCCAGTATTTGTGAAGCATACGGAAGCAATGCTCGACGAAATTGACAGGATTGAGGAAGTTGAAATGGAAGATGTGGAGGAACCCGTTTTGGACATCGACGCCTGTGATAGGAAAAATCCACTTGCAGTTGTTGAGTACATAGATGATATCTACCGTTTCTACAAGGATATTGAGAATTCTAGCTGCGTCTCTCCAAATTATATGACTAGTCAATTTGACATTAATGAAAGGATGAGGGCCATTCTTATTGACTGGCTTATTGAGGTTCACTACAAATTTGAGCTTTTGGAGGAGACATTGTTCCTTACTGTCAATCTCATAGACAGGTTCTTGGAGCTTCAGGCAGTGATCAGAAAGAAACTTCAGTTAGTTGGTGTAACAGCTATGCTAATAGCTTGTAAGTACGAGGAGGTCTCAGTCCCTACCGTTGAGGATTTTATTCTGATAACAGACAAGGCGTATACGAGAAATGAAGTTTTAGATATGGAGAAATTAATGATGAACATCTTGCAATTCAAGTTGTCTGTGCCAACTCCATACGTGTTCATGAGAAGATTTCTTAAGGCAGTTCATTCTGATAAAAAGCTTGAGCTCTTGTCCTTCTTCTTGGTCGAGCTTTGCTTGGTGGAATGCAAAATGCTGAAGTTTTCACCATCTTTGCTAGCTGCTGCAGCCATATACACAGCTCAATGTAGTCTGTACCAGTTTAAGCAATGGACTAAGACCAGCGAGTGGTATACTGATTACTCGGAAGAGCAGCTTCTAGAATGCTCAAGACTGATGGTTACTTTCCATCAGAAAGCTGGAACAGGGAAACTCACTGGCGTATATAGAAAGTACAGTACATGGAAGTATGACTGTGCTGCTAAAATAGAACCTGCCCTGTTTCTACTGGATAATTAA 1269 0.4303 MVGLHIHTAKQMDGAKENRVPPLPPIPSSNLQGGPRMESVKPLHHRLPLSNINENVMPKKNHCHVNKVDFSRKCTAPTVQHHHPRPQETKKQNLLAPTLTYQLDHDIIDIDDDEDASDNAAVPVFVKHTEAMLDEIDRIEEVEMEDVEEPVLDIDACDRKNPLAVVEYIDDIYRFYKDIENSSCVSPNYMTSQFDINERMRAILIDWLIEVHYKFELLEETLFLTVNLIDRFLELQAVIRKKLQLVGVTAMLIACKYEEVSVPTVEDFILITDKAYTRNEVLDMEKLMMNILQFKLSVPTPYVFMRRFLKAVHSDKKLELLSFFLVELCLVECKMLKFSPSLLAAAAIYTAQCSLYQFKQWTKTSEWYTDYSEEQLLECSRLMVTFHQKAGTGKLTGVYRKYSTWKYDCAAKIEPALFLLDN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4264 422 PANTHER CYCLINS 71 417 IPR039361 -
Ssu1g4264 422 Pfam Cyclin, C-terminal domain 299 415 IPR004367 -
Ssu1g4264 422 CDD CYCLIN 297 384 IPR013763 -
Ssu1g4264 422 SUPERFAMILY Cyclin-like 160 296 IPR036915 -
Ssu1g4264 422 SMART Cyclin_C_2 299 416 IPR004367 -
Ssu1g4264 422 SUPERFAMILY Cyclin-like 298 415 IPR036915 -
Ssu1g4264 422 MobiDBLite consensus disorder prediction 1 38 - -
Ssu1g4264 422 ProSitePatterns Cyclins signature. 201 232 IPR006671 -
Ssu1g4264 422 SMART cyclin_7 303 385 IPR013763 -
Ssu1g4264 422 SMART cyclin_7 206 290 IPR013763 -
Ssu1g4264 422 CDD CYCLIN 200 289 IPR013763 -
Ssu1g4264 422 PANTHER CYCLIN-B2-3-RELATED 71 417 - -
Ssu1g4264 422 Pfam Cyclin, N-terminal domain 171 297 IPR006671 -
Ssu1g4264 422 Gene3D - 171 412 - -
Ssu1g4264 422 Gene3D - 185 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4264 Ssu-Chr1 103188858 103191373 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4264 26 420 Core Cell Cycle Gene Families AT1G20610 57.007 7.25e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4264 K21777 - gmx:100812029 666.766