Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4255 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTGTCTGATGATGGGAAAGATGTTCTATGTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTGTGTCTGAAATGCAATAAGTACCCTCTTGACTGGTGTAGAAAAGCTGAACCAGTGGAAGAAGATAGAAGGAATGCTGATGATCCTTACAGCTCAAGCTGTGTAATTAACTTTGGTCGGCCACCAACTGCTAGTATAATGACAGAAAATACTGCTCCTAATATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAATTTTCAAGCTAGGGCCAACTAATGTGCAGGCAAGTGCCAACTGCCCTTCAGTCATAAGTTCCGCTGCACATTTATCATCAGCTGAGGATCAGCCAGCTGGTTTTCAAGTTAAGCATGAAATTGAAATGGTTAAAGATCCTACCATGCCTTCAGTCTTATTTGATGGAATGGCCAAAGATAGCACACATAAAAACTTAGGTATTAACAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAACTGAAATGGATGAAACTGGTGAATGCTCCTCCTCCAGTGTAATAGTCATGGATTCCACAAAGGAAGAAGTAACAGAAAAGGATTTCtgcattaatattttaagaagcCATGGACTTCTTAGAGAAGAATCTCCTGTCGATAATGTGGCTTCTGGGGAAGATGCTGTCACCACTGGTAATAGCAGCTGTTCCAGGTCATGCAAAATATGTGGCCATTCAGACAGTTCATTGAACATGCTTTTATGTGATCATTGTGAAGACGCATATCATCCGTCTTGCTACAATCCACGTTTGAAAAAATTGCCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAGAAAAGGCAGAAAATTCTCAAGGAGACAGTTATCAGATCACCAAGTATCCACAATGAATTGGGCAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCCATATTGTTGATGTTGAGAGACACCAAGCCATTTACAACTGGCGTGCGGGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGGCAGGCCCGATAAAAAGTGATGAAGATGTCCTTCCTGAACCATTGGAAATTAGTCCTTCAGAATTTTATAGACTGCTGGGAGAGAATACGAGAAGTCCTACTAGACTTAGTTCCATTGGTAATTGGATTCAATGTCGGGAAGTTATAGATAGAGCAAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCCGCACCTCAgGAGCTTGAAACAGATCAAGTACTGAAGCAACTGAAGTATATAGAAATGGTATGCGTAAActgcataatttttattattgtatttatgtCAAAGGAATATTTGGTAATTGATTAG 1473 0.3958 MLIQTSLLSSVEAGLCYVSDDGKDVLCDRMPSGETWQVCLKCNKYPLDWCRKAEPVEEDRRNADDPYSSSCVINFGRPPTASIMTENTAPNMVYRRKKLRKDSIFKLGPTNVQASANCPSVISSAAHLSSAEDQPAGFQVKHEIEMVKDPTMPSVLFDGMAKDSTHKNLGINSVNDSCSSSKPNMETEMDETGECSSSSVIVMDSTKEEVTEKDFCINILRSHGLLREESPVDNVASGEDAVTTGNSSCSRSCKICGHSDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPSIHNELGKCRTAPVKAELNPILLMLRDTKPFTTGVRVGKGFQAEVLDWAGPIKSDEDVLPEPLEISPSEFYRLLGENTRSPTRLSSIGNWIQCREVIDRANGTICGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAAPQELETDQVLKQLKYIEMVCVNCIIFIIVFMSKEYLVID 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4255 490 SUPERFAMILY FYVE/PHD zinc finger 250 304 IPR011011 -
Ssu1g4255 490 PANTHER REMODELING AND SPACING FACTOR 1 21 469 - -
Ssu1g4255 490 SMART PHD_3 252 298 IPR001965 -
Ssu1g4255 490 MobiDBLite consensus disorder prediction 172 198 - -
Ssu1g4255 490 ProSiteProfiles Zinc finger PHD-type profile. 250 300 IPR019787 -
Ssu1g4255 490 Pfam PHD-finger 253 299 IPR019787 -
Ssu1g4255 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 318 IPR013083 -
Ssu1g4255 490 PANTHER HISTONE ACETYLTRANSFERASE 21 469 - -
Ssu1g4255 490 ProSitePatterns Zinc finger PHD-type signature. 253 297 IPR019786 -
Ssu1g4255 490 Gene3D - 401 466 - -
Ssu1g4255 490 ProSiteProfiles Zinc finger CW-type profile. 397 457 IPR011124 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4255 253 298 C2H2 Transcription Factor Family AT3G01460 43.478 3.75e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu1g4255 PHD 4.3e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4255 - - gmx:100813057 900.582