Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4247 ATGGTGAGTGGTGAGCACAGTCTAGCAATGCAAATGCCAAGCCCAACCATGAAGCCACCTGTTTCCGATCAGAGCCTGTCCAAGGCTCACATCTCACCCACCCGACACAACTTTAGTTCCAAACCAGGGAGAAGTAGGAGGAACAGCAGGGGTTGTTCCTTGCCATCGGTGAACCTGCGCGCATATGACATCAATGATACGAATAGTAGTAATAGTCCATACTACAAGGGTCTCACTGACCAATCCCTTGCTACTGTGCGTACCATCGCTTCCTGCCCTGCGCCTCATACTCCTCCTACTCATGACCTCCTTTCTAGTCCATATTATAAAGGCCTTACAGATTATTCCAAAGTTATTGAACCTTGGACCCCTCACACTCACAACCATCCTGTTCCTATTCCTATTCCTATTCCTATTCCTTCCCTTTCATACACCTCTAGTCCATACTATAGAGGTCTTCTCACAGATTACTCCCTTGTACTTCATGCACCACCTATTCATATTGAACCTCCTATTCCTATCACTGACTCCCACTCCTCTATCAAAACTAAGGAACACATCGTGCACAAACTCTCAGCACCACACCCAAGAGGACCGAGTTTGAAGGACTTGATTGTCCATGATGCTCATCATGTTGACTTTCTCTTTGAACAAGAGAAAGATAAGCCTCTGATCAGGGAGAGAGTATCAGCTGGGAATGCATTAGAAGAAATTGCTGAGAAAACAACTCTGGAGGAGATGGAGATGGTCCAAAAAGGAGTTGATGAAGAGAAGCcattgagagagaaaattattttggagGAGATGGAATTGATGACAAATGTTGAGTTGGTCATTGAAGAGAAGCCATTGAGGGAGAGTGTATCAGAGCACGCAAGTGACAAGGTTGAGGGTGTATTAGAAGAAAATGCACATGAAACAATTTTGGAGGAAATGAAGTTGATGAATGATCATGTTATGGAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAACAAGCAATGTAACAATTTTGGAGATGGATGTGTGCAAGGTGGAGGAAGAGGAACTCAAAGACTATGAAAAGGAGAAGGCCTTGTCTGTTTCTGTTGATGCATCAGAATCACAATGTAAAGAGGGAGGAAATGTGTACGAGTATACATGGGCAACCAAATACCAGCCCATGAACTTGGAAGACTTCATCTGTAACAAAGATAAAGCACTTCTGCTGAAAGAAAGGGTCAAAAAAAGGAGTGGCTGCagtcattttatatttgaagGACCACCAAGTGTAGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGCTATTTGGCGCCGACAGGGTGCAGATCACTGAAGAATGTAAAAACTTCAACTTGAAGGGAGAAATGGTTAATAATCTCCAAGTGCGCGTGAAGAAATCACTCCATCATGTTGAGATCAATCTCTCAGAGACAAAGGGATATGAAAAGCATGTAATTGTTGATTTATTCAAGGAAACATATGGCCAGGTCATAAATAACTCGCAGCCTTGTTGCCCAGAAAACTGCAAAGCAATCGTTTTGTATGAGGCCGAGAAGCTATCCATGGAATCCTTGTTGTATATCAAGTGGCTACTAGAAAAGTATAAAGGGTGCAATAAGGTATTCTTTTGTTGCTCTGATGAATCTAAGCTTCAACCTGTCAAGCCACTTTGCATCACTGTCCCGTTTTCGTCACCATCAAGCGAAGAGATTGTTAAGATTTTGGAATATATTGGAAAAGTAGAAGGAATAAAATTATCACGCGACTTAGTCGAGAAGATAATTTTGAGGTCCAAAAACAATCTACGTCAAGCCATTCGTTCGTTGGAGGCCACTTGCCGAAACAAGGATGCTCTCAAAGACGACGATTTACTTCTAAGTGGTTGGGAAGAAGATATTTTGAATATTGCCGAAAAAATAACCGAAGAGCAAACTCCACGACAGTTGTACGTCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTTCTCCCGACTTTATTTACAAGTCTTTGGTAGCAGGGTTAAGGAATCTAGTTGATGAGTCGCTACGGGCAGGTGTTGCCAAACTCGACAAGGAGTTCAATAGAGTTGgagaaaacaaatttgaaacCATGAAGCAGTTCGGTCATGGTCAAAACAAACAAGCGGAATCGGATGAGAAGAACAATGACTCAACCAAAAAGAATGCGTTAACTTACTTAAAAATCGAAGatgttGTAAGTGGttcttaa 2244 0.4122 MVSGEHSLAMQMPSPTMKPPVSDQSLSKAHISPTRHNFSSKPGRSRRNSRGCSLPSVNLRAYDINDTNSSNSPYYKGLTDQSLATVRTIASCPAPHTPPTHDLLSSPYYKGLTDYSKVIEPWTPHTHNHPVPIPIPIPIPSLSYTSSPYYRGLLTDYSLVLHAPPIHIEPPIPITDSHSSIKTKEHIVHKLSAPHPRGPSLKDLIVHDAHHVDFLFEQEKDKPLIRERVSAGNALEEIAEKTTLEEMEMVQKGVDEEKPLREKIILEEMELMTNVELVIEEKPLRESVSEHASDKVEGVLEENAHETILEEMKLMNDHVMEEKPLRERVSETSNVTILEMDVCKVEEEELKDYEKEKALSVSVDASESQCKEGGNVYEYTWATKYQPMNLEDFICNKDKALLLKERVKKRSGCSHFIFEGPPSVGKRSMIRAMLRELFGADRVQITEECKNFNLKGEMVNNLQVRVKKSLHHVEINLSETKGYEKHVIVDLFKETYGQVINNSQPCCPENCKAIVLYEAEKLSMESLLYIKWLLEKYKGCNKVFFCCSDESKLQPVKPLCITVPFSSPSSEEIVKILEYIGKVEGIKLSRDLVEKIILRSKNNLRQAIRSLEATCRNKDALKDDDLLLSGWEEDILNIAEKITEEQTPRQLYVIRRKLQSLMIHDVSPDFIYKSLVAGLRNLVDESLRAGVAKLDKEFNRVGENKFETMKQFGHGQNKQAESDEKNNDSTKKNALTYLKIEDVVSGS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4247 747 PANTHER OS10G0574500 PROTEIN 293 709 - -
Ssu1g4247 747 Gene3D - 630 718 - -
Ssu1g4247 747 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 293 709 - -
Ssu1g4247 747 MobiDBLite consensus disorder prediction 711 731 - -
Ssu1g4247 747 MobiDBLite consensus disorder prediction 1 54 - -
Ssu1g4247 747 MobiDBLite consensus disorder prediction 17 54 - -
Ssu1g4247 747 Gene3D - 379 568 IPR027417 -
Ssu1g4247 747 Coils Coil 601 621 - -
Ssu1g4247 747 Gene3D - 569 628 - -
Ssu1g4247 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 625 IPR027417 -
Ssu1g4247 747 SUPERFAMILY post-AAA+ oligomerization domain-like 630 695 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4247 Ssu-Chr1 102942540 102951376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4247 381 691 Core DNA Replication Machinery Family AT5G27740 30.476 8.54e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4247 K10756 - gmx:102664389 863.603