Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4245 ATGTTGTCCATGGAGATTGATCTTGAGCTACCTATATGTGAGCATGAGAAGCTTAATACTGGATCTAGTGGAAATGATGATACTGATACAGCATGTGATATAGACGTTAAGGAGCAAAGCATCAATCCTTCTTCAATGACTGAACACTGTAAGGAAGTTTTAAGTGAAAATGCTTTCTGTTGCCAGGATCAGGTGGATTTGAATTCCAATCAAGTGGATGCTTTTGATAAATTTCCCTTTAAAGAACCACAGAATGGCTTGGAATTTGAATCAAAGGAGGCTGCCTATTCTTTCTACAGAGAATATGCTCGCTCAGTGGGATTTGGCATCACGATAAAAGCCAGTCGACGCTCAAAAAAGTctggtaaatttattgatattaaaattgctTGTTCCAGATTTGGAAGTAAGCGTGAGTCTGGTACAGTGGTTAATCCACGACCATGGACAAAGACAGACTGTAAGGCTGGCATGCATATGAAGAAGAAGCTAGATGGTAACTGGATCAtatacaattttgtaaaagagcACAATCATGAGATCTGTCCAGATGATTTTTTCAGGGGACGTAGCAAACAAACAAGTAATGTAGTTTGTCAGAAGAAGGGTTTGCAATTGGCTCTAGATGAGGGAGATGTGCAATTGATGATTGAATACTTTGTCTCTATGCAGTGTGAAAATCCCAACTTCTTCTATACAATAGACCTGGATCAGAATAGACATTTGAGAACTGTATTTTGGGTTGACTCAAAAGCAAGACTTGATTATCAAAACTTCCATGATATTGTGTTGATTGATACTTTTTACctgaaaaacaaatataaaatacctTTTGTTCCTTTTGTCGGAGTCAACCATCACTTCCAGTACATTTTACTTGGATGTGCACTGGTTGGGGAGGAGACTGTTTCAGCTTTTATATGGTTAATGCGAGCATGGCTTAAAGCAATGAGTAACCTACCTCCAAAGGTGATTATCACAGACCAAGAGCAATTCTTGAAAGAAGCCGTTATGGAAGTGTTTCCAGATAAATGTCATTGTTTCTGTCTATCacatattttatgtaaaatcaCCAAGAATTTGGATTATATCAtagatcaaaataattattttatggaaaaaattgacaaatgcATTCATCATTCCTGTTCACACGAGCAGTTTGAAAAGAGATGGTGGAAACTGATCAATAGATTTGAACTAAAGGATGATGAATGGGTTCAGTCATTGTATGAAGATCGTAAAAAGTGGGTGCCTACATACATGCGGGACATTTCTTTGGCTGGATTATCAACAACTGTAAGGTCTGAAAGTATATCATCATCCTTTGACAAGTATATTTGTGTTGATTCTACCTTTAAGGAATTTATTGAACAGTATAAAGTTTTCTCTACAGACAGTTTTGACATGGAAGCCAAAGCTGACTCTGAAACAAGACAAAAACAACCTGCATTAAGATCTTTATCACCTTTTGAGAAGCAGCTATCTACAATTTATACAGATGccatatttagaaaatttcagTTGGAAATATTGGGAATGATGTCTTGTCATCTCCAGAAAGAAACAGAAGACAGGGCAAATGTAACATTTCTTGTTGATGATTTTGAAGAGCAGAAGAAATTTATTGTTTCTTGGAATGAAGCAGATTTGGATGTCTATTGTTCATGTTGTTTATTTCAATACAAAGGTTTTCTTTGTAGACATGCAATACTTGTTCTTCAAAAGTCCGGCATAACCAACATTCCATcccattatattttaaaacgaTGGACAAAAGATGCAAAGGCCAATCAGTTTTTTGGTGACATAATTACCAGGACTGCTAATCGAGTTCATCGTTTTAATGACCTTTGTAGGCGGGCAATTATATTAAGTGAAATTGGGTCTTTATCTGAAGATACTTACCATGTTGCATCTCAGGCATTGGAAGAAGTCTATAAATACTGTGTGCGTGCAAACAATTCTGCTAGAAGCACTTTAGGGCCCAACAAGTTGGCTCTTAATGATTTTGAtgttgaagagaaaaattatggCTGCCACAGGGTGAAGCCTACTAAGAAAAGGAAGTCATTTAACAAAAGGGATTGCTCTGATCCAGAAAGAATCAATATCAAGATGCTGGACAATTTCCAAAATAGGGAACAGAGAAATTCGAGAGCACACAACTTTGATAATTGTTATATTTCTCAGCCGGACATACAAGCTGTGGACTTGGATTCTAGAGCTTCAACTCTTGATGGCTATTATGAGGCTCAACAGAATGTGCTTGGAGACCTGAACTCAGTTTCTGTCATGCATGATGACTATTATGGCAGTCAACCGGCCATTCTAGGACTGAGGCAATTGCATTCCATGCCAAACCGTGGTCCACATTATGGGATGCAGCACAGCATGCAAGGACCGGTTCAAGGACAGCGCACTTTCAGAACGCCAACAGTGCAAGGGTGTTTTGACCTTCAAGATAGTCTAGAAGTTATGGAACAACCTATTAGGGCCTCGCAGTTCCATGGCATTACATCAAAGCAACTAGATGTTGATAAATCACTTTCTTGA 2556 0.3599 MLSMEIDLELPICEHEKLNTGSSGNDDTDTACDIDVKEQSINPSSMTEHCKEVLSENAFCCQDQVDLNSNQVDAFDKFPFKEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKKSGKFIDIKIACSRFGSKRESGTVVNPRPWTKTDCKAGMHMKKKLDGNWIIYNFVKEHNHEICPDDFFRGRSKQTSNVVCQKKGLQLALDEGDVQLMIEYFVSMQCENPNFFYTIDLDQNRHLRTVFWVDSKARLDYQNFHDIVLIDTFYLKNKYKIPFVPFVGVNHHFQYILLGCALVGEETVSAFIWLMRAWLKAMSNLPPKVIITDQEQFLKEAVMEVFPDKCHCFCLSHILCKITKNLDYIIDQNNYFMEKIDKCIHHSCSHEQFEKRWWKLINRFELKDDEWVQSLYEDRKKWVPTYMRDISLAGLSTTVRSESISSSFDKYICVDSTFKEFIEQYKVFSTDSFDMEAKADSETRQKQPALRSLSPFEKQLSTIYTDAIFRKFQLEILGMMSCHLQKETEDRANVTFLVDDFEEQKKFIVSWNEADLDVYCSCCLFQYKGFLCRHAILVLQKSGITNIPSHYILKRWTKDAKANQFFGDIITRTANRVHRFNDLCRRAIILSEIGSLSEDTYHVASQALEEVYKYCVRANNSARSTLGPNKLALNDFDVEEKNYGCHRVKPTKKRKSFNKRDCSDPERINIKMLDNFQNREQRNSRAHNFDNCYISQPDIQAVDLDSRASTLDGYYEAQQNVLGDLNSVSVMHDDYYGSQPAILGLRQLHSMPNRGPHYGMQHSMQGPVQGQRTFRTPTVQGCFDLQDSLEVMEQPIRASQFHGITSKQLDVDKSLS 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4245 851 Pfam MULE transposase domain 262 354 IPR018289 -
Ssu1g4245 851 Pfam FAR1 DNA-binding domain 97 182 IPR004330 -
Ssu1g4245 851 Pfam SWIM zinc finger 551 576 IPR007527 GO:0008270
Ssu1g4245 851 SMART 26again6 553 580 IPR006564 GO:0008270
Ssu1g4245 851 PANTHER PROTEIN FAR1-RELATED SEQUENCE 2 38 766 - -
Ssu1g4245 851 ProSiteProfiles Zinc finger SWIM-type profile. 540 578 IPR007527 GO:0008270
Ssu1g4245 851 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 766 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4245 Ssu-Chr1 102917420 102920653 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu1g4245 MULE 5.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4245 - - gmx:100802811 1421.37