Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4244 ATGCCTATGGTGGTTGGGCAGGTTGTTCCTCCTAATCCTAATCCTTCGAATTTGTTCCTCAATCGTTCTGCTGCTACTGCTACCACACTCATACCCACTTCCGCTCCCAGACACGTTCTCTCTTTCTCCGCCTCTGCCTCCGCCAATAAAAAAGCACATGACACAACCGCAACCAATAAAAACGCCGACAACGATTCTCCATTCTCAAGTTTTGGAAGGCTCAGGGCCCAGAAAGTGAAAACTCTGGTCCACAGAAGCAGGGAGCAAAGACGCGCCGTTGAAGTTGAAGATGAAGACGATGACGTAGCCCCCAGACATTCACATTCACGGTTACGAGGACGAGGAGGATGGGATACCATTCCCAAGTTTCCCTCACAAACCAAATCATCGACTGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGAAATAGGGTGCAGTGACTATATCATTCAATCCCTCCAAAAACTCTTCTTCACGCGCCCTTCCCATGTACAGGCCATGGCATTTACACCTGTTATTAGCGGAAAGACTTGTGTCGTAGCTGATCAAAGTGGTTCTGGAAAGACATTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAAGAACTTGAAGGACGTAGTAAATCCTCTTCACAAGCTCCTAGACTCGTTGTACTCGCACCCACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCCATGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACAGGAGGTTTTCGACAAAGGACTCAGCTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTTTGTTCCTCATAAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTATTTGGTGATGAGGACTTCGAAGAGGCTCTTCAATGCTTGATCAATTCTTCACCGTTTGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAATTGGTTCAAGTTTTTCCTGATTGTGAAATGATTATGGGACCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTCTAGTAGATTGCAGTGGAGAAGAGGGACAAGAAAAAACTCATGATACAGCATTTTTGAACAAGAAAGCTGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTATTCTGCAACAAAaTTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTTTTGATAGAAAAGGTAATCGCGTGCAAATTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAATATGGAAGAGTTTACACGTTCTCCATCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCACGGGGAATAGACTTCGCAGGAGTGGATCACGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTGCGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTGGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAGGTATCCCTTGCACGCAAAATAATGGAAAGAAATCGGAAGGGTCACCCACTACATGATGTGCCTACGGCTTATTAG 1629 0.4432 MPMVVGQVVPPNPNPSNLFLNRSAATATTLIPTSAPRHVLSFSASASANKKAHDTTATNKNADNDSPFSSFGRLRAQKVKTLVHRSREQRRAVEVEDEDDDVAPRHSHSRLRGRGGWDTIPKFPSQTKSSTDTNFFSLKSFKEIGCSDYIIQSLQKLFFTRPSHVQAMAFTPVISGKTCVVADQSGSGKTLAYLAPIIQRLRQEELEGRSKSSSQAPRLVVLAPTAELASQVLDNCRSMSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEEALQCLINSSPFDTQYLFVTATLPKNVYSKLVQVFPDCEMIMGPGMHRISSRLEEILVDCSGEEGQEKTHDTAFLNKKAALLQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNRVQILPFHAAMTQESRLANMEEFTRSPSKGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPTAY 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4244 542 CDD DEADc 150 337 - -
Ssu1g4244 542 MobiDBLite consensus disorder prediction 85 124 - -
Ssu1g4244 542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 386 542 IPR001650 -
Ssu1g4244 542 Gene3D - 118 351 IPR027417 -
Ssu1g4244 542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 515 IPR027417 -
Ssu1g4244 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 540 - -
Ssu1g4244 542 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Ssu1g4244 542 SMART ultradead3 158 366 IPR014001 -
Ssu1g4244 542 Gene3D - 359 536 IPR027417 -
Ssu1g4244 542 Pfam DEAD/DEAH box helicase 164 337 IPR011545 GO:0003676|GO:0005524
Ssu1g4244 542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 351 IPR014001 -
Ssu1g4244 542 MobiDBLite consensus disorder prediction 85 115 - -
Ssu1g4244 542 CDD SF2_C_DEAD 363 514 - -
Ssu1g4244 542 MobiDBLite consensus disorder prediction 49 70 - -
Ssu1g4244 542 SMART helicmild6 414 504 IPR001650 -
Ssu1g4244 542 Pfam Helicase conserved C-terminal domain 387 503 IPR001650 -
Ssu1g4244 542 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4244 Ssu-Chr1 102903975 102907958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4244 138 525 Eukaryotic Initiation Factors Gene Family AT3G19760 27.506 7.88e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4244 K13179 - gmx:100784377 823.928