Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4240 ATGGACATGGGCGATGGAGCAGAGCCCGTGGACATGGAGGATGACACTTCTGTGTATGGTTTGATATCCCAAGAGGACGATCTGTGGTTGAACTTCCTGGAACTGGAAGATGCTGATACTACTCCTGCTGTGGAGGATCAAATTATGCTATCGCCTAACGCCGCAATAGAAATGGAATACCCTTATCCTGGAAGGTGTAGTCAATCACAACGAGCAGCCTCATTAAAAAGGTTCCGGCAAAAGAGGAAACAACGATGCTTTGGTAACAAAGTTAGATATAGGACACGTCAAGAAGCTGCCCTCAGGGTACATCGTAGTAAGACCCAGCTTATTTTGTCCAAAATGCATGATGGACCTAATAGTTTGGAGGCAATCCAGGAGTCAGGGCAAGATGACATTCAGTCAGaaattttATGCACGTATTGTGGCATCAGTTCAAAATGCACCCCTATGATGCGGCGAGGGCCATCTGGTCCAGGATCGCTTTGCAACGCTTGTGGGCTTTCTTGGGCGAATAGGGGTGCCTTCAACTATAAGAAAACGGTTTAA 549 0.4663 MDMGDGAEPVDMEDDTSVYGLISQEDDLWLNFLELEDADTTPAVEDQIMLSPNAAIEMEYPYPGRCSQSQRAASLKRFRQKRKQRCFGNKVRYRTRQEAALRVHRSKTQLILSKMHDGPNSLEAIQESGQDDIQSEILCTYCGISSKCTPMMRRGPSGPGSLCNACGLSWANRGAFNYKKTV 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4240 182 PANTHER GATA TRANSCRIPTION FACTOR 25 51 176 - -
Ssu1g4240 182 Pfam CCT motif 71 108 IPR010402 GO:0005515
Ssu1g4240 182 ProSiteProfiles CCT domain profile. 71 113 IPR010402 GO:0005515
Ssu1g4240 182 Gene3D - 135 181 IPR013088 GO:0006355|GO:0008270
Ssu1g4240 182 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 175 - -
Ssu1g4240 182 CDD ZnF_GATA 139 174 IPR000679 GO:0006355|GO:0043565
Ssu1g4240 182 Pfam GATA zinc finger 139 174 IPR000679 GO:0006355|GO:0043565
Ssu1g4240 182 SMART GATA_3 133 180 IPR000679 GO:0006355|GO:0043565
Ssu1g4240 182 PANTHER GATA TRANSCRIPTION FACTOR 28 51 176 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4240 Ssu-Chr1 102871571 102874164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4240 62 176 Tify Gene Family AT4G24470 64.348 7.98e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g4240 CCT 8.5e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4240 - - vra:106760511 193.741