Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4237 ATGGTGGATGATTgtgggaagaagaagaggctAATTTGGCTTGATGGCCTAACATTGGACCAATTTGGGCTTAAAAAGCAGCAGCCCATAAGAAATATAACCGGGATCAATTTCATTCTTTGGCCTGTTGGGCTGGATCAAGCCTTTCGTTTTGCAAGTTCTGATAATAGTCGTTATAAAAACGGTGATAAAGCCCGTAAACGAAGCCCAGAAACAACCCTAAAAGCCCCTGCTCCCACTTCCACCTTTCCCTTCTCGTCTCTCTGCCTTAGCCGCTGCGCGCTACTACTCAATTGCAATGAGGGAAAGACTGATTACCGAGCTAGGATTCGCTTGATTAACCAAGACAAAAACAAGTATAACACTCCAAAATACCGCTTCGTGGTTCGATTTACAAACAAGAATATCATTGCTCAAATAATATCTGCTAGCATTGCTGGTGACATTGTTCTTGCTGCGGCTTACTCACGCGAACTGCCGCGTTATGGTCTTGAAGTAGGCCTTACAAACTATGCTGCAGCCTATTGCACTGGACTCCTATTGGCTCGCCGAGTTCTTAAAATGCTCGAAATGGACGAGGAGTATGAGGGCAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGACCCGGAGGCCATTCCGTGCTCTCCTCGATGTTGGTCTTATTAGAACTACAACTGGCAATCGTGTCTTCGGTGCCCTCAAGGGAGCTTTGGATGGGGGTCTGGATATCCCTCACAGTGATAAAAGGTTTGCTGGTTTTGACAAGGAGAAGAAAGAGCTAGATCCTGAGTTTCACCGTAAATACATCTTTGGTGGGCATGTTGCTGCCTACATGAAGACTTTGATGGAAGATGAGCCAGAGAAATACCAGTTACACTTCAGCGAATATCTCAAGCGTGGACTAGAGGCTGATGGACTTGAGGAGCTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCACAATCAAGAAGTCTGACAAGCAGCCACCGAAAGAACACAAGAGGTACAACCTCAAGAAGCTCACGTACGAGGAGAGGAAGGCAAAGCTGATTGCACGCTTGCAGGCTCTTAATTCCGCTGCCGGAGCTGCTGAAGATGACGATGATGAGTGA 1131 0.4571 MVDDCGKKKRLIWLDGLTLDQFGLKKQQPIRNITGINFILWPVGLDQAFRFASSDNSRYKNGDKARKRSPETTLKAPAPTSTFPFSSLCLSRCALLLNCNEGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKNIIAQIISASIAGDIVLAAAYSRELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPEFHRKYIFGGHVAAYMKTLMEDEPEKYQLHFSEYLKRGLEADGLEELYKKVHAAIRADPTIKKSDKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAAGAAEDDDDE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4237 376 CDD Ribosomal_L18_L5e 117 246 - -
Ssu1g4237 376 Hamap 50S ribosomal protein L18 [rplR]. 90 322 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 Pfam Ribosomal L18 C-terminal region 311 364 IPR025607 -
Ssu1g4237 376 PANTHER RIBOSOMAL PROTEIN L5-RELATED 100 376 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 SUPERFAMILY Translational machinery components 101 328 - -
Ssu1g4237 376 PANTHER - 100 376 - -
Ssu1g4237 376 MobiDBLite consensus disorder prediction 57 71 - -
Ssu1g4237 376 MobiDBLite consensus disorder prediction 57 78 - -
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 220 239 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 119 138 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 282 302 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 96 115 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 240 259 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 PRINTS Ribosomal protein L5 signature 160 180 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 101 251 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Ssu1g4237 376 Coils Coil 346 366 - -
Ssu1g4237 376 Gene3D - 99 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4237 Ssu-Chr1 102822791 102829032 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4237 101 368 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.090 1.99e-165 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4237 K02932 - gmx:100805868 475.707