Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4235 atgtcgAAGGAAGTGAGCGAAGAAGGGCAGCAGAGGAAGGACTACGTAGACCCTCCTCCAGCGCCTCTCATCGACTTGGCCGAGATTAAGCTGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATTGCCACACTCCTCTTCCTGTACGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAAACCGGCCCATGCGACGGCGTTGGCCTTCTCGGCATCGCCTGGGCCTTCGGTGGCATGATCTTTGTCCTCGTCTACTGCACCGCCGGTATTTCAGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCGCGTAAGGTGTCTCTGATCCGAGCCGTTTTGTACATGGTAGCACAGTGCCTGGGTGCTATCTGCGGTGTTGGCTTGGTGAAGGCCTTCATGAAGCACCCTTACAACTCCCTTGGCGGCGGTGCTAACACTATTTCTCCTGGCTACAACAAAGGCACTGCTCTGGGAGCCGAGATCATCGGCACTTTTGTGCTCGTTTACACCGTTTTCTCAGCCACCGACCCCAAGAGAAGCGCCCGTGACTCCCATGTCCCCGTTTTGGCCCCATTGCCCATTGGCTTCGCCGTTTTCATGGTTCACTTGGCGACCATACCCATCACTGGTACCGGCATTAATCCAGCTAGGAGCTTCGGTGCTGCTGTTATCTACAACGATGCCAAAGCTTGGGATGACCATTGGGTCTTCTGGGTTGGGCCATTCGTGGGAGCGTTGGCGGCTGCTGCATACCACCAGTACATACTGAGAGCGGCGGCTATCAAGGCACTGGGGTCGTTCCGGAGCAACCCCACCAACTAG 837 0.5639 MSKEVSEEGQQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANTISPGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNDAKAWDDHWVFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 200 222 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 164 182 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 PRINTS Major intrinsic protein family signature 240 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 CDD MIP 36 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 TIGRFAM MIP: MIP family channel proteins 40 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 Gene3D Glycerol uptake facilitator protein. 21 278 IPR023271 -
Ssu1g4235 278 Pfam Major intrinsic protein 29 256 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g4235 278 SUPERFAMILY Aquaporin-like 28 262 IPR023271 -
Ssu1g4235 278 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 278 - -
Ssu1g4235 278 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Ssu1g4235 278 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 278 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4235 Ssu-Chr1 102795287 102796393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4235 1 278 Major Intrinsic Protein MIP AT2G16850 91.367 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4235 K09872 - vra:106761912 540.421