Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4228 ATGATGTCAAGCCACGACGACGACCTCGATCTCCTCCTTTCCCTTCACGATACTGATAGGGTTGCCGACACTCCTCCCTCACCCTCACCCTCACCCTCACCCTCACCAGGTATCTATCACTCTCATTTTGTGTCAGGTTACCTCTCCGATGATGAATCGCCTAAGCAAAGGGAGAAGCCCGACATGTCCGTATTCAAAAACGCTGTTCAGGATTGCCTTCCCTACGATCCCCCCAAACCAACTAACAAACCCGTTACCAATGATTCCCAGCTTGAAAAGTTTTCAGGCCTTCGAATAAGGAACCAATTGTTAACTCCTGCCGAGCTTAGGGAACACTTTTCAGACATTCGTTTTGTTCGGTTATCAGTTATCAAGAATTCTTTGACTGGGGATACTTTTTCTGGAAGTTGGGCCACTGTTGGAGTATTGACCGAGAAGGGGACTCAGAAGACGAGTTCATCAGGGAAGGGCTATTGTATATGGAAAATTGGGTCTTTGGATGAAAATActgtttctcttttcttgtttgGGGATGCTTATCAGAAGAACATGCAAGAGCAGGCGGGAACGGTCTTTGCACTCTTTAATTGTTCTGTCCGCAAGGATACTGTGGGTAATGGTTTTTCTTTGAGTATATACTCCCCTAGACAAATTATGAAGATGGGCACCTCTGTTGATTACGGAGTTTGCAAAGGGAAAAGAACAGATGGGCTGGCTTGTACGCTGGTCATAAATAAACGTCATGGGACATAttgtaaatatcataaatcaAAAGCATCAGAGAAATATTCCACGATGCGAAGTGAACTCAAGGGAGGAAACTTAAGAACAGCGTTTAGGCCTAGGGATTACCTCAAATCAGAAGGAATTTACTTAGTTGACCCTCTTGCTGACAAAACAAACTTGAAGAAGTCTCAGCCAGTGAAATTATTGTCTGTGGATGGTCTCAGAAAGGCATTGAGCAATGCAGGGAAAGTAACAACAACTACTCATTCGCAAGGGATTAGGTTTCTTTCTGAGGTTGCAGGCAAGTCAGatcaaaaaatgaagaataaaggACCAAAGGCTCCAAATGAACAAAACAAATCCACGGAGAAGAGGAAATCATCTTTTTCGAATGTGGGATCCTCTGCAGTCATAAGAAACCAACAGTTGgatgtaaaaagaataaaaccaGACGGGCAGGTTTTGGCTGATAAAACCACGAAGAGTACAGGAAAGATGATTGAATTAGATCTTGTAAGTTCGGATGAAGACTTCTGA 1263 0.4149 MMSSHDDDLDLLLSLHDTDRVADTPPSPSPSPSPSPGIYHSHFVSGYLSDDESPKQREKPDMSVFKNAVQDCLPYDPPKPTNKPVTNDSQLEKFSGLRIRNQLLTPAELREHFSDIRFVRLSVIKNSLTGDTFSGSWATVGVLTEKGTQKTSSSGKGYCIWKIGSLDENTVSLFLFGDAYQKNMQEQAGTVFALFNCSVRKDTVGNGFSLSIYSPRQIMKMGTSVDYGVCKGKRTDGLACTLVINKRHGTYCKYHKSKASEKYSTMRSELKGGNLRTAFRPRDYLKSEGIYLVDPLADKTNLKKSQPVKLLSVDGLRKALSNAGKVTTTTHSQGIRFLSEVAGKSDQKMKNKGPKAPNEQNKSTEKRKSSFSNVGSSAVIRNQQLDVKRIKPDGQVLADKTTKSTGKMIELDLVSSDEDF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4228 420 PANTHER PROTEIN MCM10 HOMOLOG 33 382 IPR040184 GO:0003690|GO:0003697|GO:0006270
Ssu1g4228 420 MobiDBLite consensus disorder prediction 340 402 - -
Ssu1g4228 420 MobiDBLite consensus disorder prediction 1 17 - -
Ssu1g4228 420 MobiDBLite consensus disorder prediction 367 383 - -
Ssu1g4228 420 Gene3D - 82 256 IPR012340 -
Ssu1g4228 420 MobiDBLite consensus disorder prediction 343 366 - -
Ssu1g4228 420 MobiDBLite consensus disorder prediction 1 61 - -
Ssu1g4228 420 Pfam Primase zinc finger 222 267 IPR015408 GO:0005634|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4228 Ssu-Chr1 102665655 102668518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4228 20 419 Core DNA Replication Machinery Family AT2G20980 55.990 1.28e-146 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4228 K10736 - gmx:100527758 649.432