Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4223 ATGGGTTTTTTCAGCaccatttttggtttttttggcTTTGGAATTGGGATTTCCATCGGTCTTGTTGTTggctattttctctttatttacgTTCAACCCACCGATGTTAAGGATCCTGAAATCCAGCCATTGGTGGAAGAAGACTCGGAAACTCTGCAACGAATGATTCCTGAGATTCCACTTTGGATAAAAAATCCTGACTTTGATCGGGTTGACTGGCTTAACAAGCTTATTGAATATATGTGGCCATACCTTGACAAggcaatatgcaAGACTGCAAAGAATATTGCAAAACCTATAATTGCTGAGCAGataccaaaatataaaattgattctgTTGAGTTCGAAGAGCTCACACTAGGGTCCCTGCCACTAACTTTTCAAGGAATGAAAGTTTATGAGACTGATGAAAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAATCCTAATGTCATTATTGCTGTTAAGAAATTTGGGTTGAAAGCAACCATTCAGgTGATAGATTTGCAAGTTTTTCTTGCACCTCGCATTACTTTAAAACCTTTGGTTCCAAGCTTTCCATGCTTTGCCAATATCTATGTGTCTCTCATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTTGTAGGGGCTGATCTTATGTCTATTCCTGGACTCTATAAGTTTGTTCAGGAGTTTATCAAAGACCAGGTTGCAAATATGTATCTATGGCCTAAAACCCTAGAAGTTCAAGTTATAGATCCAACAAAAGCCTTTAAGAGGCCCGTTGGAATTTTAAATGCAAAGGTTTTGAAAGCAATGAAGTTAAAGAAGAAAGATCTTCTTGGTGCATCTGACCCTTACGTGATGCTAAAACTTACTGAGGATAACTTGGCATCGAAAAAGACTACCGTGAAGCACAAGAACTTGAATCCTGAATGGAATGAGGAATTTAGTTTGGTTGTTAAAGATCCTGAGTCTCAGGCTTTAGAGCTTCGTGTCTATGACTGGGAGCAGGAGGAAGACTTGGCCAAAGCTTTTGATAGGACACAGTCAATGCAAAAAGCTCCCGAAGGCACTCCTCCTGGTGGAGGTTTACTCGTAGTTATAATCCATGAAGGTCAAGACATCGAGGGAAAGTACCATACTAATCCCCATGTACGTCTTATTTTCAGAGGAGAGGAAAAAAGGACTAAGAGCATGAAAAAGAACAGGGATCCAAGGTGGGAAGAGGAGTTTCAATTTTTGGTGGAAGAGCCTCCCACTAAAGACAAATTACATGTGGAGGTTGTTAGCACTTCATCACGAAACCTGCTACGTCAAAAGGAATCACTGGGTTACGCTGACATTAGTCTTGCGGATGTTGTTGCCAACAATAGAATCAATGAGAGGCACCATCTTATAGATTCCAAGAATGGCCGCATCCAGATAGAGCTACAGTGGAGAGCTTCATAA 1443 0.3881 MGFFSTIFGFFGFGIGISIGLVVGYFLFIYVQPTDVKDPEIQPLVEEDSETLQRMIPEIPLWIKNPDFDRVDWLNKLIEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFEELTLGSLPLTFQGMKVYETDEKELIMEPSVKWAGNPNVIIAVKKFGLKATIQVIDLQVFLAPRITLKPLVPSFPCFANIYVSLMEKPHVDFGLKLVGADLMSIPGLYKFVQEFIKDQVANMYLWPKTLEVQVIDPTKAFKRPVGILNAKVLKAMKLKKKDLLGASDPYVMLKLTEDNLASKKTTVKHKNLNPEWNEEFSLVVKDPESQALELRVYDWEQEEDLAKAFDRTQSMQKAPEGTPPGGGLLVVIIHEGQDIEGKYHTNPHVRLIFRGEEKRTKSMKKNRDPRWEEEFQFLVEEPPTKDKLHVEVVSTSSRNLLRQKESLGYADISLADVVANNRINERHHLIDSKNGRIQIELQWRAS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4223 480 Gene3D C2 domain 243 343 IPR035892 -
Ssu1g4223 480 Pfam C2 domain 362 460 IPR000008 -
Ssu1g4223 480 Pfam C2 domain 260 336 IPR000008 -
Ssu1g4223 480 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 247 IPR039010 -
Ssu1g4223 480 Gene3D C2 domain 362 479 IPR035892 -
Ssu1g4223 480 CDD C2 363 464 - -
Ssu1g4223 480 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Ssu1g4223 480 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 335 IPR035892 -
Ssu1g4223 480 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Ssu1g4223 480 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 335 IPR045050 GO:0008289
Ssu1g4223 480 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 335 479 IPR045050 GO:0008289
Ssu1g4223 480 PRINTS C2 domain signature 304 317 IPR000008 -
Ssu1g4223 480 PRINTS C2 domain signature 277 289 IPR000008 -
Ssu1g4223 480 PRINTS C2 domain signature 326 334 IPR000008 -
Ssu1g4223 480 SMART C2_3c 261 358 IPR000008 -
Ssu1g4223 480 SMART C2_3c 362 460 IPR000008 -
Ssu1g4223 480 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 361 478 IPR035892 -
Ssu1g4223 480 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 335 479 - -
Ssu1g4223 480 CDD C2 262 334 - -
Ssu1g4223 480 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4223 Ssu-Chr1 102606172 102615440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4223 259 334 C2H2 Transcription Factor Family AT4G05330 41.558 2.17e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4223 - - gmx:100780850 837.025