Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g4221 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGactaaagaagaagatgatcgTCTCATAGCTTACATTAGAGCTCACGGTGAAGGATGCTGGCGCTCTCTCCCCAAAGCCGCTGGCCTTCTCCGTTGCGGCAAGAGTTGCCGTCTCCGCTGGATCAACTATCTCCGCCCTGACCTCAAACGCGGCAATTTCACCCAAGAAGAAGATGAACTCATCATCAAACTCCACAGCCTCCTTGGCAACAAGTGGTCTCTAATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCACTCAACGACGACGCTTCTCATCATAATCAAGTTCAAGAACCTGCTGCTACCGCCACTGTATCTTTTGCTCCACCTGCTCCTAAACAAGAGGAAAAAGACAACGTGTTCGTGGAGATTATGGATTCCAAAGGACCCACATCGGAACGCTGCCCTGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCATCAGCCTGATCAGCCACTGAAGAGTGTGGGGAGAGGCCTTTGCTTTGCCTGCAGTTTGGGTTTACAAAATAGCAAAGATTGCAGCTGTGGGGTCAATGCTAACTTGGGAAACACTAGTAGTGGCAACGGTGCTGCTGGCTATGATTTCTTGGGCTTGAAAACCAGCGTTTTGGATTACAGAAGCGtgcaaatgaaatga 771 0.4708 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDDASHHNQVQEPAATATVSFAPPAPKQEEKDNVFVEIMDSKGPTSERCPDLNLELTISPPHQPDQPLKSVGRGLCFACSLGLQNSKDCSCGVNANLGNTSSGNGAAGYDFLGLKTSVLDYRSVQMK 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g4221 256 CDD SANT 69 112 IPR001005 -
Ssu1g4221 256 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu1g4221 256 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu1g4221 256 Gene3D - 68 144 - -
Ssu1g4221 256 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Ssu1g4221 256 CDD SANT 16 61 IPR001005 -
Ssu1g4221 256 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu1g4221 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu1g4221 256 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu1g4221 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu1g4221 256 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 225 - -
Ssu1g4221 256 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 225 - -
Ssu1g4221 256 Gene3D - 14 66 - -
Ssu1g4221 256 SMART sant 66 114 IPR001005 -
Ssu1g4221 256 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g4221 Ssu-Chr1 102570007 102571040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g4221 1 256 MYB Transcription Factor Family AT4G38620 60.211 4.62e-111 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g4221 Myb_DNA-binding 3.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g4221 K09422 - mnt:21407715 389.423